miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12602 5' -49.5 NC_003345.1 + 63486 0.66 0.982599
Target:  5'- -gGGcCUUCGUAgCgCGAGUGACcugauAGACAGa -3'
miRNA:   3'- gaCC-GAAGCGU-G-GCUUACUG-----UUUGUC- -5'
12602 5' -49.5 NC_003345.1 + 52262 0.67 0.965692
Target:  5'- -aGGCUcaauaUCGUACCGcucuccgucAGaGACGAACAGa -3'
miRNA:   3'- gaCCGA-----AGCGUGGC---------UUaCUGUUUGUC- -5'
12602 5' -49.5 NC_003345.1 + 7523 0.67 0.962026
Target:  5'- uUGGCggaUUGCcuuuCCGAGUGACucGAACAa -3'
miRNA:   3'- gACCGa--AGCGu---GGCUUACUG--UUUGUc -5'
12602 5' -49.5 NC_003345.1 + 4958 0.67 0.958096
Target:  5'- uCUGGagaUUCG-ACCGAggGACGGAgGGg -3'
miRNA:   3'- -GACCg--AAGCgUGGCUuaCUGUUUgUC- -5'
12602 5' -49.5 NC_003345.1 + 14977 0.68 0.93963
Target:  5'- -gGGCUUCGCuCCGAAc-ACGGGCGa -3'
miRNA:   3'- gaCCGAAGCGuGGCUUacUGUUUGUc -5'
12602 5' -49.5 NC_003345.1 + 7936 0.71 0.82118
Target:  5'- aUGGCggCGCGgCGAAUGACu--CGGu -3'
miRNA:   3'- gACCGaaGCGUgGCUUACUGuuuGUC- -5'
12602 5' -49.5 NC_003345.1 + 36348 0.72 0.77177
Target:  5'- aUGGCUcgcUCGgGCCGuggucgaaccGUGACGAACGGa -3'
miRNA:   3'- gACCGA---AGCgUGGCu---------UACUGUUUGUC- -5'
12602 5' -49.5 NC_003345.1 + 27080 0.73 0.75087
Target:  5'- -cGGCUacuUCGCACCGGAcGACGAGu-- -3'
miRNA:   3'- gaCCGA---AGCGUGGCUUaCUGUUUguc -5'
12602 5' -49.5 NC_003345.1 + 20908 1.1 0.004706
Target:  5'- gCUGGCUUCGCACCGAAUGACAAACAGa -3'
miRNA:   3'- -GACCGAAGCGUGGCUUACUGUUUGUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.