Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12602 | 5' | -49.5 | NC_003345.1 | + | 20908 | 1.1 | 0.004706 |
Target: 5'- gCUGGCUUCGCACCGAAUGACAAACAGa -3' miRNA: 3'- -GACCGAAGCGUGGCUUACUGUUUGUC- -5' |
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12602 | 5' | -49.5 | NC_003345.1 | + | 27080 | 0.73 | 0.75087 |
Target: 5'- -cGGCUacuUCGCACCGGAcGACGAGu-- -3' miRNA: 3'- gaCCGA---AGCGUGGCUUaCUGUUUguc -5' |
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12602 | 5' | -49.5 | NC_003345.1 | + | 36348 | 0.72 | 0.77177 |
Target: 5'- aUGGCUcgcUCGgGCCGuggucgaaccGUGACGAACGGa -3' miRNA: 3'- gACCGA---AGCgUGGCu---------UACUGUUUGUC- -5' |
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12602 | 5' | -49.5 | NC_003345.1 | + | 7936 | 0.71 | 0.82118 |
Target: 5'- aUGGCggCGCGgCGAAUGACu--CGGu -3' miRNA: 3'- gACCGaaGCGUgGCUUACUGuuuGUC- -5' |
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12602 | 5' | -49.5 | NC_003345.1 | + | 14977 | 0.68 | 0.93963 |
Target: 5'- -gGGCUUCGCuCCGAAc-ACGGGCGa -3' miRNA: 3'- gaCCGAAGCGuGGCUUacUGUUUGUc -5' |
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12602 | 5' | -49.5 | NC_003345.1 | + | 4958 | 0.67 | 0.958096 |
Target: 5'- uCUGGagaUUCG-ACCGAggGACGGAgGGg -3' miRNA: 3'- -GACCg--AAGCgUGGCUuaCUGUUUgUC- -5' |
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12602 | 5' | -49.5 | NC_003345.1 | + | 7523 | 0.67 | 0.962026 |
Target: 5'- uUGGCggaUUGCcuuuCCGAGUGACucGAACAa -3' miRNA: 3'- gACCGa--AGCGu---GGCUUACUG--UUUGUc -5' |
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12602 | 5' | -49.5 | NC_003345.1 | + | 52262 | 0.67 | 0.965692 |
Target: 5'- -aGGCUcaauaUCGUACCGcucuccgucAGaGACGAACAGa -3' miRNA: 3'- gaCCGA-----AGCGUGGC---------UUaCUGUUUGUC- -5' |
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12602 | 5' | -49.5 | NC_003345.1 | + | 63486 | 0.66 | 0.982599 |
Target: 5'- -gGGcCUUCGUAgCgCGAGUGACcugauAGACAGa -3' miRNA: 3'- gaCC-GAAGCGU-G-GCUUACUG-----UUUGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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