Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12603 | 5' | -53.2 | NC_003345.1 | + | 21668 | 1.09 | 0.002888 |
Target: 5'- cGACGACGACGGUGACUCCGACGAUUCc -3' miRNA: 3'- -CUGCUGCUGCCACUGAGGCUGCUAAG- -5' |
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12603 | 5' | -53.2 | NC_003345.1 | + | 23692 | 0.78 | 0.304192 |
Target: 5'- aGACcucuACGGUGGUGACUCCGACGAcUCg -3' miRNA: 3'- -CUGc---UGCUGCCACUGAGGCUGCUaAG- -5' |
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12603 | 5' | -53.2 | NC_003345.1 | + | 72410 | 0.78 | 0.319247 |
Target: 5'- --gGGCGGCGGUGGCcCCGACGAc-- -3' miRNA: 3'- cugCUGCUGCCACUGaGGCUGCUaag -5' |
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12603 | 5' | -53.2 | NC_003345.1 | + | 32709 | 0.72 | 0.625258 |
Target: 5'- -cCGGCuACGGcGGC-CCGACGAUUCa -3' miRNA: 3'- cuGCUGcUGCCaCUGaGGCUGCUAAG- -5' |
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12603 | 5' | -53.2 | NC_003345.1 | + | 50789 | 0.71 | 0.689644 |
Target: 5'- aACGGCGGCGGUGGaaaCGGCGGg-- -3' miRNA: 3'- cUGCUGCUGCCACUgagGCUGCUaag -5' |
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12603 | 5' | -53.2 | NC_003345.1 | + | 52778 | 0.7 | 0.741927 |
Target: 5'- uACGAUGGCGGcuaugaugcucuUGACUCCGAgGGc-- -3' miRNA: 3'- cUGCUGCUGCC------------ACUGAGGCUgCUaag -5' |
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12603 | 5' | -53.2 | NC_003345.1 | + | 23731 | 0.69 | 0.752107 |
Target: 5'- uGACGACGcCGGaGACgaugCCGACGcucagcagucGUUCg -3' miRNA: 3'- -CUGCUGCuGCCaCUGa---GGCUGC----------UAAG- -5' |
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12603 | 5' | -53.2 | NC_003345.1 | + | 67353 | 0.69 | 0.77112 |
Target: 5'- cGGCGAaauacgcUGACGGUGGC-CCucCGGUUCa -3' miRNA: 3'- -CUGCU-------GCUGCCACUGaGGcuGCUAAG- -5' |
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12603 | 5' | -53.2 | NC_003345.1 | + | 21717 | 0.68 | 0.801043 |
Target: 5'- aGCGGCucgcuCGGUggcGACUCCGGCGGUg- -3' miRNA: 3'- cUGCUGcu---GCCA---CUGAGGCUGCUAag -5' |
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12603 | 5' | -53.2 | NC_003345.1 | + | 73511 | 0.68 | 0.810364 |
Target: 5'- -cCGGCGGCGGUGGCUgaG-CGAaUCu -3' miRNA: 3'- cuGCUGCUGCCACUGAggCuGCUaAG- -5' |
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12603 | 5' | -53.2 | NC_003345.1 | + | 45506 | 0.68 | 0.819505 |
Target: 5'- gGACGACGAgGGcGAC-CgCGACGAc-- -3' miRNA: 3'- -CUGCUGCUgCCaCUGaG-GCUGCUaag -5' |
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12603 | 5' | -53.2 | NC_003345.1 | + | 2618 | 0.68 | 0.819505 |
Target: 5'- cGGCGACGGCGGUaguGACaCCGAagaCGGUc- -3' miRNA: 3'- -CUGCUGCUGCCA---CUGaGGCU---GCUAag -5' |
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12603 | 5' | -53.2 | NC_003345.1 | + | 57438 | 0.68 | 0.826683 |
Target: 5'- -cCGAgGACGGUGaguggucGCUCCGACucgauguGGUUCc -3' miRNA: 3'- cuGCUgCUGCCAC-------UGAGGCUG-------CUAAG- -5' |
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12603 | 5' | -53.2 | NC_003345.1 | + | 40184 | 0.68 | 0.845761 |
Target: 5'- aACGGCGACGaGcGAgacuacCUCCGACGAg-- -3' miRNA: 3'- cUGCUGCUGC-CaCU------GAGGCUGCUaag -5' |
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12603 | 5' | -53.2 | NC_003345.1 | + | 44242 | 0.67 | 0.850787 |
Target: 5'- aGACaGACGAUGGUGAUguugaacucauccCCGAgGAUUa -3' miRNA: 3'- -CUG-CUGCUGCCACUGa------------GGCUgCUAAg -5' |
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12603 | 5' | -53.2 | NC_003345.1 | + | 55678 | 0.67 | 0.862205 |
Target: 5'- uGACGcCGAUGGgGACUCCcaaggugguGACGGUa- -3' miRNA: 3'- -CUGCuGCUGCCaCUGAGG---------CUGCUAag -5' |
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12603 | 5' | -53.2 | NC_003345.1 | + | 52519 | 0.67 | 0.87773 |
Target: 5'- cGACaACGACGGgcagguugcUGACgCCGAgaCGGUUCa -3' miRNA: 3'- -CUGcUGCUGCC---------ACUGaGGCU--GCUAAG- -5' |
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12603 | 5' | -53.2 | NC_003345.1 | + | 49647 | 0.67 | 0.879977 |
Target: 5'- uGCGGCGGuuagugaggauacuuUGGUGGCUgaaaaucCCGACGAcUCg -3' miRNA: 3'- cUGCUGCU---------------GCCACUGA-------GGCUGCUaAG- -5' |
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12603 | 5' | -53.2 | NC_003345.1 | + | 50140 | 0.66 | 0.892286 |
Target: 5'- cGGCaACGAaggcucCGGcGGCUCCGGCGGUg- -3' miRNA: 3'- -CUGcUGCU------GCCaCUGAGGCUGCUAag -5' |
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12603 | 5' | -53.2 | NC_003345.1 | + | 45347 | 0.66 | 0.905831 |
Target: 5'- gGACGAUugcGCGGUGugUcCCGAgugcUGGUUCu -3' miRNA: 3'- -CUGCUGc--UGCCACugA-GGCU----GCUAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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