miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12604 5' -50.3 NC_003345.1 + 21919 1.14 0.002351
Target:  5'- aGGCUCUCUACCUCGGUGUAAAGACUCg -3'
miRNA:   3'- -CCGAGAGAUGGAGCCACAUUUCUGAG- -5'
12604 5' -50.3 NC_003345.1 + 38095 0.74 0.644394
Target:  5'- cGGCUCUCggaACCUCGGUcaGAAGG-UCg -3'
miRNA:   3'- -CCGAGAGa--UGGAGCCAcaUUUCUgAG- -5'
12604 5' -50.3 NC_003345.1 + 7337 0.69 0.889632
Target:  5'- uGGCcggUCgcggCUACCaagcaaaguggCGGUGUAAAGACUg -3'
miRNA:   3'- -CCG---AGa---GAUGGa----------GCCACAUUUCUGAg -5'
12604 5' -50.3 NC_003345.1 + 6961 0.69 0.896861
Target:  5'- aGGCUgUCU--CUCGGUGU---GGCUCa -3'
miRNA:   3'- -CCGAgAGAugGAGCCACAuuuCUGAG- -5'
12604 5' -50.3 NC_003345.1 + 59483 0.69 0.896861
Target:  5'- cGGCgCUCUGCUggUCGGUGgu--GGCUa -3'
miRNA:   3'- -CCGaGAGAUGG--AGCCACauuuCUGAg -5'
12604 5' -50.3 NC_003345.1 + 15102 0.67 0.953805
Target:  5'- aGuCUCUgCUAUCUCGGU----GGACUCg -3'
miRNA:   3'- cC-GAGA-GAUGGAGCCAcauuUCUGAG- -5'
12604 5' -50.3 NC_003345.1 + 11286 0.67 0.953805
Target:  5'- aGUUCg-UugCUCGGUcGUAGAGGCUg -3'
miRNA:   3'- cCGAGagAugGAGCCA-CAUUUCUGAg -5'
12604 5' -50.3 NC_003345.1 + 48365 0.66 0.957971
Target:  5'- aGCUCUCcauuuCCuUCGGUGUAuuGGC-Cg -3'
miRNA:   3'- cCGAGAGau---GG-AGCCACAUuuCUGaG- -5'
12604 5' -50.3 NC_003345.1 + 52067 0.66 0.974963
Target:  5'- uGGCUCaggauauugaguUCgccuUCUCGGUGUcgGAAGACa- -3'
miRNA:   3'- -CCGAG------------AGau--GGAGCCACA--UUUCUGag -5'
12604 5' -50.3 NC_003345.1 + 33150 0.66 0.974963
Target:  5'- cGGCguagc-CCUCGGUGUGGAG-CUUc -3'
miRNA:   3'- -CCGagagauGGAGCCACAUUUCuGAG- -5'
12604 5' -50.3 NC_003345.1 + 62474 0.7 0.849582
Target:  5'- cGGUUacgaUUgggACUUCGGcGUAAAGACUCa -3'
miRNA:   3'- -CCGAg---AGa--UGGAGCCaCAUUUCUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.