Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12605 | 5' | -51.2 | NC_003345.1 | + | 25681 | 0.66 | 0.940047 |
Target: 5'- gCUGAacuuCAACgAGCAGGUaGACCUcgcGGCu -3' miRNA: 3'- -GACU----GUUGgUCGUCCAaCUGGAc--UUG- -5' |
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12605 | 5' | -51.2 | NC_003345.1 | + | 62872 | 0.66 | 0.939532 |
Target: 5'- -cGACGuggaguaGCCcucagagucccgAGCAGGguagacGACCUGAACg -3' miRNA: 3'- gaCUGU-------UGG------------UCGUCCaa----CUGGACUUG- -5' |
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12605 | 5' | -51.2 | NC_003345.1 | + | 56409 | 0.66 | 0.929217 |
Target: 5'- -cGGCGGauaCAGCAGG-UGACgCUGAu- -3' miRNA: 3'- gaCUGUUg--GUCGUCCaACUG-GACUug -5' |
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12605 | 5' | -51.2 | NC_003345.1 | + | 70995 | 0.67 | 0.917246 |
Target: 5'- aUGGCGACCAGCAGuaaacuCCagaUGAGCg -3' miRNA: 3'- gACUGUUGGUCGUCcaacu-GG---ACUUG- -5' |
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12605 | 5' | -51.2 | NC_003345.1 | + | 69302 | 0.67 | 0.917246 |
Target: 5'- --cGCGACCuguucguggAGCAGGUUGACC--AGCa -3' miRNA: 3'- gacUGUUGG---------UCGUCCAACUGGacUUG- -5' |
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12605 | 5' | -51.2 | NC_003345.1 | + | 45547 | 0.72 | 0.654757 |
Target: 5'- --cGCGACCAGCAGGUUcucacGACUcgugUGGACa -3' miRNA: 3'- gacUGUUGGUCGUCCAA-----CUGG----ACUUG- -5' |
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12605 | 5' | -51.2 | NC_003345.1 | + | 22764 | 1.11 | 0.002578 |
Target: 5'- uCUGACAACCAGCAGGUUGACCUGAACg -3' miRNA: 3'- -GACUGUUGGUCGUCCAACUGGACUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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