miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12606 3' -44.4 NC_003345.1 + 23627 1.1 0.015926
Target:  5'- aAAUACAACAUCCUCGAAGAAAAGGUCg -3'
miRNA:   3'- -UUAUGUUGUAGGAGCUUCUUUUCCAG- -5'
12606 3' -44.4 NC_003345.1 + 65038 0.78 0.773017
Target:  5'- ---cCAGCGuaUCCUCGggGAAGGGGUg -3'
miRNA:   3'- uuauGUUGU--AGGAGCuuCUUUUCCAg -5'
12606 3' -44.4 NC_003345.1 + 68111 0.76 0.870505
Target:  5'- -cUGCGGCAaCCUUGAGGAAAAguuuGGUCg -3'
miRNA:   3'- uuAUGUUGUaGGAGCUUCUUUU----CCAG- -5'
12606 3' -44.4 NC_003345.1 + 14577 0.75 0.893916
Target:  5'- --aGCGGCAaucuUCCUCGAAGccugcggcuaugcGGAAGGUCg -3'
miRNA:   3'- uuaUGUUGU----AGGAGCUUC-------------UUUUCCAG- -5'
12606 3' -44.4 NC_003345.1 + 63530 0.73 0.959392
Target:  5'- --cGCAACAUCCUCGAugcucucucGGAGGGagcuuacccGGUCu -3'
miRNA:   3'- uuaUGUUGUAGGAGCU---------UCUUUU---------CCAG- -5'
12606 3' -44.4 NC_003345.1 + 64647 0.72 0.970625
Target:  5'- ---cCGACGUUCUUGggGAAguuagguucGAGGUCa -3'
miRNA:   3'- uuauGUUGUAGGAGCuuCUU---------UUCCAG- -5'
12606 3' -44.4 NC_003345.1 + 69643 0.72 0.970625
Target:  5'- --cACGGCAUcuaCCUCGAAGAcGAGGa- -3'
miRNA:   3'- uuaUGUUGUA---GGAGCUUCUuUUCCag -5'
12606 3' -44.4 NC_003345.1 + 75232 0.71 0.979436
Target:  5'- gAGUAUAGCGUCUcCGAGGAc--GGUCa -3'
miRNA:   3'- -UUAUGUUGUAGGaGCUUCUuuuCCAG- -5'
12606 3' -44.4 NC_003345.1 + 9840 0.7 0.992271
Target:  5'- -cUACGACGcCCUCGAAGAAGAaaUCc -3'
miRNA:   3'- uuAUGUUGUaGGAGCUUCUUUUccAG- -5'
12606 3' -44.4 NC_003345.1 + 24572 0.7 0.993404
Target:  5'- --aGCGGuCGUCCUCGgcGGcaggacgccgGGAGGUCg -3'
miRNA:   3'- uuaUGUU-GUAGGAGCuuCU----------UUUCCAG- -5'
12606 3' -44.4 NC_003345.1 + 33267 0.7 0.993404
Target:  5'- -cUACGcUGUCCUCGAAGAAgGAGG-Cg -3'
miRNA:   3'- uuAUGUuGUAGGAGCUUCUU-UUCCaG- -5'
12606 3' -44.4 NC_003345.1 + 75063 0.7 0.993404
Target:  5'- --cACGuuucaGUCCUCGAAGguAAGGUUu -3'
miRNA:   3'- uuaUGUug---UAGGAGCUUCuuUUCCAG- -5'
12606 3' -44.4 NC_003345.1 + 73202 0.69 0.996624
Target:  5'- --aGCGAauCAUCCUCG-GGAAgccacacGAGGUCg -3'
miRNA:   3'- uuaUGUU--GUAGGAGCuUCUU-------UUCCAG- -5'
12606 3' -44.4 NC_003345.1 + 24658 0.69 0.996685
Target:  5'- --gACGACcgcUCCUUGAuaGGAAcAGGUCg -3'
miRNA:   3'- uuaUGUUGu--AGGAGCU--UCUUuUCCAG- -5'
12606 3' -44.4 NC_003345.1 + 18060 0.68 0.997196
Target:  5'- --aGCAACGUCCUCGcccuuucGAGucGAGGg- -3'
miRNA:   3'- uuaUGUUGUAGGAGC-------UUCuuUUCCag -5'
12606 3' -44.4 NC_003345.1 + 66673 0.68 0.997248
Target:  5'- --aACGACcUCCUCGggGuuagcAAGGUa -3'
miRNA:   3'- uuaUGUUGuAGGAGCuuCuu---UUCCAg -5'
12606 3' -44.4 NC_003345.1 + 52470 0.68 0.998284
Target:  5'- aGGUGCugAACAUCCUCGAugagauuguguacgaGGAAGuuGUCg -3'
miRNA:   3'- -UUAUG--UUGUAGGAGCU---------------UCUUUucCAG- -5'
12606 3' -44.4 NC_003345.1 + 20152 0.68 0.998773
Target:  5'- --aGCAcucGCAUCCcCGAuaccaucGggGAGGUCg -3'
miRNA:   3'- uuaUGU---UGUAGGaGCUu------CuuUUCCAG- -5'
12606 3' -44.4 NC_003345.1 + 53031 0.67 0.999213
Target:  5'- --gGCGAcCAUCCUCGGGugcGAGGUUg -3'
miRNA:   3'- uuaUGUU-GUAGGAGCUUcuuUUCCAG- -5'
12606 3' -44.4 NC_003345.1 + 31635 0.67 0.999213
Target:  5'- --aACAcCAUCaUCGAGGggGAGGa- -3'
miRNA:   3'- uuaUGUuGUAGgAGCUUCuuUUCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.