miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12607 3' -58.2 NC_003345.1 + 23736 1.12 0.000524
Target:  5'- aCGCCGGAGACGAUGCCGACGCUCAGCa -3'
miRNA:   3'- -GCGGCCUCUGCUACGGCUGCGAGUCG- -5'
12607 3' -58.2 NC_003345.1 + 33214 0.73 0.281807
Target:  5'- uCGCCGGAGACGAagGuuGAccCGCUCuacGUg -3'
miRNA:   3'- -GCGGCCUCUGCUa-CggCU--GCGAGu--CG- -5'
12607 3' -58.2 NC_003345.1 + 35848 0.71 0.363933
Target:  5'- aGCUaaAGACGAUGCCGGa-CUCGGCg -3'
miRNA:   3'- gCGGccUCUGCUACGGCUgcGAGUCG- -5'
12607 3' -58.2 NC_003345.1 + 50043 0.7 0.415232
Target:  5'- cCGCCGGAGccuuCGuUGCCGuugGCGCUU-GCg -3'
miRNA:   3'- -GCGGCCUCu---GCuACGGC---UGCGAGuCG- -5'
12607 3' -58.2 NC_003345.1 + 61011 0.7 0.424204
Target:  5'- gGCCGGGGACGuuAUGgCGAaGUUgGGCg -3'
miRNA:   3'- gCGGCCUCUGC--UACgGCUgCGAgUCG- -5'
12607 3' -58.2 NC_003345.1 + 74592 0.7 0.44249
Target:  5'- uCGCCucuGAGAgCGAUGCUGACGUUgAuGCg -3'
miRNA:   3'- -GCGGc--CUCU-GCUACGGCUGCGAgU-CG- -5'
12607 3' -58.2 NC_003345.1 + 20235 0.69 0.47073
Target:  5'- uCGCCGGGGACGGacuUGCCacgGAgGUcgaacacgUCGGCc -3'
miRNA:   3'- -GCGGCCUCUGCU---ACGG---CUgCG--------AGUCG- -5'
12607 3' -58.2 NC_003345.1 + 68257 0.69 0.490057
Target:  5'- uCGCUGGAGAuuCGAgacgGCuCGAUGC-CGGUg -3'
miRNA:   3'- -GCGGCCUCU--GCUa---CG-GCUGCGaGUCG- -5'
12607 3' -58.2 NC_003345.1 + 37139 0.68 0.529757
Target:  5'- uGCUGGcGACGAUGuucguuuauCCGugGCUCuuuGUg -3'
miRNA:   3'- gCGGCCuCUGCUAC---------GGCugCGAGu--CG- -5'
12607 3' -58.2 NC_003345.1 + 23029 0.68 0.529757
Target:  5'- uGCCGGAGACGua-CCGgcgaaucucgucACGCUCAu- -3'
miRNA:   3'- gCGGCCUCUGCuacGGC------------UGCGAGUcg -5'
12607 3' -58.2 NC_003345.1 + 61146 0.68 0.539871
Target:  5'- gCGUCGGcGGCGGUaaugGUCGGCGCUCucggAGUg -3'
miRNA:   3'- -GCGGCCuCUGCUA----CGGCUGCGAG----UCG- -5'
12607 3' -58.2 NC_003345.1 + 71594 0.68 0.543935
Target:  5'- uCGUCGGGGGacggaagcucaaccuCGggGUCGAuuccagccCGCUCAGCg -3'
miRNA:   3'- -GCGGCCUCU---------------GCuaCGGCU--------GCGAGUCG- -5'
12607 3' -58.2 NC_003345.1 + 75410 0.68 0.560287
Target:  5'- -aCCGGGGccGCGAgGUCGGCGgUUCAGCc -3'
miRNA:   3'- gcGGCCUC--UGCUaCGGCUGC-GAGUCG- -5'
12607 3' -58.2 NC_003345.1 + 62070 0.68 0.574704
Target:  5'- aGCCGGAGuagcUGAUggaagugaccgaauaGCCGGuCGCcuUCAGCg -3'
miRNA:   3'- gCGGCCUCu---GCUA---------------CGGCU-GCG--AGUCG- -5'
12607 3' -58.2 NC_003345.1 + 43232 0.68 0.579875
Target:  5'- aGCCGcgaaguauuccccGAaguuGugGAUGCUGGCGUUCAGg -3'
miRNA:   3'- gCGGC-------------CU----CugCUACGGCUGCGAGUCg -5'
12607 3' -58.2 NC_003345.1 + 55446 0.68 0.58091
Target:  5'- -aCCGGAGGgGGUGgCGGCgGUUCAGa -3'
miRNA:   3'- gcGGCCUCUgCUACgGCUG-CGAGUCg -5'
12607 3' -58.2 NC_003345.1 + 56053 0.67 0.612114
Target:  5'- gCGCUGGuGGgGGUGCUGGCGgUCuGa -3'
miRNA:   3'- -GCGGCCuCUgCUACGGCUGCgAGuCg -5'
12607 3' -58.2 NC_003345.1 + 61044 0.67 0.622556
Target:  5'- gCGCCGaccauuacCGccGCCGACGCUCGGg -3'
miRNA:   3'- -GCGGCcucu----GCuaCGGCUGCGAGUCg -5'
12607 3' -58.2 NC_003345.1 + 53168 0.67 0.633007
Target:  5'- uCGCUGGAGGagcuUGCUGGaaugGUUCAGCu -3'
miRNA:   3'- -GCGGCCUCUgcu-ACGGCUg---CGAGUCG- -5'
12607 3' -58.2 NC_003345.1 + 71118 0.67 0.633007
Target:  5'- aGCCGGuuuCGA--CCGACGCUCAu- -3'
miRNA:   3'- gCGGCCucuGCUacGGCUGCGAGUcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.