Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12607 | 3' | -58.2 | NC_003345.1 | + | 23029 | 0.68 | 0.529757 |
Target: 5'- uGCCGGAGACGua-CCGgcgaaucucgucACGCUCAu- -3' miRNA: 3'- gCGGCCUCUGCuacGGC------------UGCGAGUcg -5' |
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12607 | 3' | -58.2 | NC_003345.1 | + | 68257 | 0.69 | 0.490057 |
Target: 5'- uCGCUGGAGAuuCGAgacgGCuCGAUGC-CGGUg -3' miRNA: 3'- -GCGGCCUCU--GCUa---CG-GCUGCGaGUCG- -5' |
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12607 | 3' | -58.2 | NC_003345.1 | + | 20235 | 0.69 | 0.47073 |
Target: 5'- uCGCCGGGGACGGacuUGCCacgGAgGUcgaacacgUCGGCc -3' miRNA: 3'- -GCGGCCUCUGCU---ACGG---CUgCG--------AGUCG- -5' |
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12607 | 3' | -58.2 | NC_003345.1 | + | 74592 | 0.7 | 0.44249 |
Target: 5'- uCGCCucuGAGAgCGAUGCUGACGUUgAuGCg -3' miRNA: 3'- -GCGGc--CUCU-GCUACGGCUGCGAgU-CG- -5' |
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12607 | 3' | -58.2 | NC_003345.1 | + | 61011 | 0.7 | 0.424204 |
Target: 5'- gGCCGGGGACGuuAUGgCGAaGUUgGGCg -3' miRNA: 3'- gCGGCCUCUGC--UACgGCUgCGAgUCG- -5' |
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12607 | 3' | -58.2 | NC_003345.1 | + | 50043 | 0.7 | 0.415232 |
Target: 5'- cCGCCGGAGccuuCGuUGCCGuugGCGCUU-GCg -3' miRNA: 3'- -GCGGCCUCu---GCuACGGC---UGCGAGuCG- -5' |
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12607 | 3' | -58.2 | NC_003345.1 | + | 35848 | 0.71 | 0.363933 |
Target: 5'- aGCUaaAGACGAUGCCGGa-CUCGGCg -3' miRNA: 3'- gCGGccUCUGCUACGGCUgcGAGUCG- -5' |
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12607 | 3' | -58.2 | NC_003345.1 | + | 33214 | 0.73 | 0.281807 |
Target: 5'- uCGCCGGAGACGAagGuuGAccCGCUCuacGUg -3' miRNA: 3'- -GCGGCCUCUGCUa-CggCU--GCGAGu--CG- -5' |
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12607 | 3' | -58.2 | NC_003345.1 | + | 23736 | 1.12 | 0.000524 |
Target: 5'- aCGCCGGAGACGAUGCCGACGCUCAGCa -3' miRNA: 3'- -GCGGCCUCUGCUACGGCUGCGAGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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