miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12607 5' -55.5 NC_003345.1 + 24522 0.66 0.796365
Target:  5'- gUGGCGuauucGGAUGC-CGGAcGAgACGAGCg -3'
miRNA:   3'- -ACCGC-----CUUGCGaGCCUaCU-UGCUCGa -5'
12607 5' -55.5 NC_003345.1 + 60214 0.66 0.771222
Target:  5'- gUGGCGGAACGCUCaGGcucagcucucccaacUGAaggaagaccuguACGAGaCg -3'
miRNA:   3'- -ACCGCCUUGCGAGcCU---------------ACU------------UGCUC-Ga -5'
12607 5' -55.5 NC_003345.1 + 56577 0.66 0.767267
Target:  5'- cGGUugauGGAaagcACGCuUCGGAgcuUGGugGAGCUu -3'
miRNA:   3'- aCCG----CCU----UGCG-AGCCU---ACUugCUCGA- -5'
12607 5' -55.5 NC_003345.1 + 38626 0.67 0.726665
Target:  5'- cGGCGcGGGcCGaCUCGGuucccGUGGAUGGGCg -3'
miRNA:   3'- aCCGC-CUU-GC-GAGCC-----UACUUGCUCGa -5'
12607 5' -55.5 NC_003345.1 + 3382 0.67 0.726665
Target:  5'- cGGCGGAGagaGCggCGGAUugcGAugGaAGCg -3'
miRNA:   3'- aCCGCCUUg--CGa-GCCUA---CUugC-UCGa -5'
12607 5' -55.5 NC_003345.1 + 35545 0.67 0.726665
Target:  5'- --cCGGGACGgUCGuGGUGGACGAGg- -3'
miRNA:   3'- accGCCUUGCgAGC-CUACUUGCUCga -5'
12607 5' -55.5 NC_003345.1 + 58859 0.68 0.684622
Target:  5'- gGGCGGGAuggagUGCUacgugaaGGGUGGggacguugGCGAGCUa -3'
miRNA:   3'- aCCGCCUU-----GCGAg------CCUACU--------UGCUCGA- -5'
12607 5' -55.5 NC_003345.1 + 39333 0.68 0.667554
Target:  5'- aUGG-GGAugG-UCGGAagaaggaguaucgccUGAACGAGCUu -3'
miRNA:   3'- -ACCgCCUugCgAGCCU---------------ACUUGCUCGA- -5'
12607 5' -55.5 NC_003345.1 + 28106 0.73 0.381401
Target:  5'- cGGUGGAcguuCGCUCGGAUGAuguGGCa -3'
miRNA:   3'- aCCGCCUu---GCGAGCCUACUugcUCGa -5'
12607 5' -55.5 NC_003345.1 + 23772 1.07 0.001974
Target:  5'- cUGGCGGAACGCUCGGAUGAACGAGCUu -3'
miRNA:   3'- -ACCGCCUUGCGAGCCUACUUGCUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.