Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12608 | 3' | -48.6 | NC_003345.1 | + | 767 | 0.67 | 0.973371 |
Target: 5'- cCGAAcgGUCGgGGGCGGGuaaguACGUCu -3' miRNA: 3'- uGCUU--UAGCgUCCGCCUuagu-UGUAG- -5' |
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12608 | 3' | -48.6 | NC_003345.1 | + | 2566 | 0.68 | 0.950886 |
Target: 5'- uCGAAGUCGaugagacGGCGGAAUCgAACGa- -3' miRNA: 3'- uGCUUUAGCgu-----CCGCCUUAG-UUGUag -5' |
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12608 | 3' | -48.6 | NC_003345.1 | + | 16562 | 0.66 | 0.988877 |
Target: 5'- aGCGAuuucggugaacaAGUCGCAGGUGucGUUGGCAgUCg -3' miRNA: 3'- -UGCU------------UUAGCGUCCGCcuUAGUUGU-AG- -5' |
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12608 | 3' | -48.6 | NC_003345.1 | + | 24355 | 1.11 | 0.004792 |
Target: 5'- gACGAAAUCGCAGGCGGAAUCAACAUCg -3' miRNA: 3'- -UGCUUUAGCGUCCGCCUUAGUUGUAG- -5' |
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12608 | 3' | -48.6 | NC_003345.1 | + | 24503 | 0.72 | 0.841253 |
Target: 5'- gACGAGAcgaGCgAGGuCGGAcgaGUCAACGUCa -3' miRNA: 3'- -UGCUUUag-CG-UCC-GCCU---UAGUUGUAG- -5' |
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12608 | 3' | -48.6 | NC_003345.1 | + | 26564 | 0.71 | 0.858784 |
Target: 5'- cCGggGUgGUAgcGGCGGAgguggGUCGGCAUCc -3' miRNA: 3'- uGCuuUAgCGU--CCGCCU-----UAGUUGUAG- -5' |
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12608 | 3' | -48.6 | NC_003345.1 | + | 30020 | 0.68 | 0.950886 |
Target: 5'- gACGAGAaCGCcGaGCGGAAUCAGgCAg- -3' miRNA: 3'- -UGCUUUaGCGuC-CGCCUUAGUU-GUag -5' |
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12608 | 3' | -48.6 | NC_003345.1 | + | 32585 | 0.75 | 0.685131 |
Target: 5'- cCGAGGUCGCucGGGUGGcucaccgcaucgaGGUCGGCGUCg -3' miRNA: 3'- uGCUUUAGCG--UCCGCC-------------UUAGUUGUAG- -5' |
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12608 | 3' | -48.6 | NC_003345.1 | + | 37959 | 0.69 | 0.935909 |
Target: 5'- uCGAGAagauguguaaGCGGGuCGGAAUCGACGUg -3' miRNA: 3'- uGCUUUag--------CGUCC-GCCUUAGUUGUAg -5' |
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12608 | 3' | -48.6 | NC_003345.1 | + | 43106 | 0.66 | 0.990338 |
Target: 5'- cACGggGa-GCGGGacaGGAAUCuucACAUCc -3' miRNA: 3'- -UGCuuUagCGUCCg--CCUUAGu--UGUAG- -5' |
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12608 | 3' | -48.6 | NC_003345.1 | + | 43593 | 0.7 | 0.904423 |
Target: 5'- -aGAGGUCGUAguuccccguGGUGGAGUCAuacaguuguucgaGCAUCg -3' miRNA: 3'- ugCUUUAGCGU---------CCGCCUUAGU-------------UGUAG- -5' |
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12608 | 3' | -48.6 | NC_003345.1 | + | 45448 | 0.66 | 0.985445 |
Target: 5'- aGCGAGAagGC-GGCGGu-UCAGC-UCg -3' miRNA: 3'- -UGCUUUagCGuCCGCCuuAGUUGuAG- -5' |
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12608 | 3' | -48.6 | NC_003345.1 | + | 46230 | 0.67 | 0.973371 |
Target: 5'- uACGAGGUCGC--GCGGugcGUCAugcgauACAUCg -3' miRNA: 3'- -UGCUUUAGCGucCGCCu--UAGU------UGUAG- -5' |
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12608 | 3' | -48.6 | NC_003345.1 | + | 49428 | 0.67 | 0.970273 |
Target: 5'- uAUGGAAUCGgGaaguguGGCuGGAAUCAguACGUCg -3' miRNA: 3'- -UGCUUUAGCgU------CCG-CCUUAGU--UGUAG- -5' |
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12608 | 3' | -48.6 | NC_003345.1 | + | 50055 | 0.72 | 0.841253 |
Target: 5'- uACGAGGUUGCuGGUGGGGggacuggaAACGUCa -3' miRNA: 3'- -UGCUUUAGCGuCCGCCUUag------UUGUAG- -5' |
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12608 | 3' | -48.6 | NC_003345.1 | + | 50527 | 0.7 | 0.898083 |
Target: 5'- cGCGGgccacAAUCGCGGGgGGAG-CGGCAg- -3' miRNA: 3'- -UGCU-----UUAGCGUCCgCCUUaGUUGUag -5' |
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12608 | 3' | -48.6 | NC_003345.1 | + | 56654 | 0.75 | 0.697432 |
Target: 5'- cACGGAuUCGgAGGCGGuuUCGGCuAUCg -3' miRNA: 3'- -UGCUUuAGCgUCCGCCuuAGUUG-UAG- -5' |
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12608 | 3' | -48.6 | NC_003345.1 | + | 57628 | 0.68 | 0.966926 |
Target: 5'- cCGAAGUCG-AGGuCGGGAcgcUCAGCAa- -3' miRNA: 3'- uGCUUUAGCgUCC-GCCUU---AGUUGUag -5' |
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12608 | 3' | -48.6 | NC_003345.1 | + | 62674 | 0.68 | 0.966926 |
Target: 5'- uCGu-GUCGCuGaCGGAGUUAACGUCg -3' miRNA: 3'- uGCuuUAGCGuCcGCCUUAGUUGUAG- -5' |
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12608 | 3' | -48.6 | NC_003345.1 | + | 63188 | 0.76 | 0.641103 |
Target: 5'- uUGAAGUCGCGGcuuGCGGggUUGACGUa -3' miRNA: 3'- uGCUUUAGCGUC---CGCCuuAGUUGUAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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