Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12608 | 3' | -48.6 | NC_003345.1 | + | 56654 | 0.75 | 0.697432 |
Target: 5'- cACGGAuUCGgAGGCGGuuUCGGCuAUCg -3' miRNA: 3'- -UGCUUuAGCgUCCGCCuuAGUUG-UAG- -5' |
|||||||
12608 | 3' | -48.6 | NC_003345.1 | + | 32585 | 0.75 | 0.685131 |
Target: 5'- cCGAGGUCGCucGGGUGGcucaccgcaucgaGGUCGGCGUCg -3' miRNA: 3'- uGCUUUAGCG--UCCGCC-------------UUAGUUGUAG- -5' |
|||||||
12608 | 3' | -48.6 | NC_003345.1 | + | 63188 | 0.76 | 0.641103 |
Target: 5'- uUGAAGUCGCGGcuuGCGGggUUGACGUa -3' miRNA: 3'- uGCUUUAGCGUC---CGCCuuAGUUGUAg -5' |
|||||||
12608 | 3' | -48.6 | NC_003345.1 | + | 24355 | 1.11 | 0.004792 |
Target: 5'- gACGAAAUCGCAGGCGGAAUCAACAUCg -3' miRNA: 3'- -UGCUUUAGCGUCCGCCUUAGUUGUAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home