Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12610 | 3' | -51.4 | NC_003345.1 | + | 24640 | 0.66 | 0.951735 |
Target: 5'- gGAACAggucgcGGGCCGCUGGUcaauucgagguaUUUgUCUgGUg -3' miRNA: 3'- -CUUGU------UCUGGCGACCA------------AGAgAGAgCG- -5' |
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12610 | 3' | -51.4 | NC_003345.1 | + | 19710 | 0.67 | 0.914223 |
Target: 5'- aGAACGAGcCUGCUacucGUUCUUcaUCUCGUa -3' miRNA: 3'- -CUUGUUCuGGCGAc---CAAGAG--AGAGCG- -5' |
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12610 | 3' | -51.4 | NC_003345.1 | + | 51588 | 0.67 | 0.907753 |
Target: 5'- cGGGCAAGACacgacgaccuCGCc-GUaCUCUCUCGCu -3' miRNA: 3'- -CUUGUUCUG----------GCGacCAaGAGAGAGCG- -5' |
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12610 | 3' | -51.4 | NC_003345.1 | + | 40888 | 0.67 | 0.901009 |
Target: 5'- aGGACGAGACCGggGGUUCaaaucccccCUCagGCu -3' miRNA: 3'- -CUUGUUCUGGCgaCCAAGa--------GAGagCG- -5' |
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12610 | 3' | -51.4 | NC_003345.1 | + | 62829 | 0.7 | 0.780946 |
Target: 5'- uGACGAG--CGCgUGGUUC-CUCUCGCu -3' miRNA: 3'- cUUGUUCugGCG-ACCAAGaGAGAGCG- -5' |
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12610 | 3' | -51.4 | NC_003345.1 | + | 70203 | 0.71 | 0.739837 |
Target: 5'- cGGugAGGACgaGCUGGcaaacUUCUCuaUCUCGCg -3' miRNA: 3'- -CUugUUCUGg-CGACC-----AAGAG--AGAGCG- -5' |
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12610 | 3' | -51.4 | NC_003345.1 | + | 25341 | 1.13 | 0.002039 |
Target: 5'- uGAACAAGACCGCUGGUUCUCUCUCGCg -3' miRNA: 3'- -CUUGUUCUGGCGACCAAGAGAGAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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