miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12610 5' -51.4 NC_003345.1 + 73880 0.66 0.931105
Target:  5'- cGAGCAggACGUGGAACCCGUccggGGCGa -3'
miRNA:   3'- -CUUGU--UGUGCCUUGGGCGauagUCGC- -5'
12610 5' -51.4 NC_003345.1 + 29500 0.67 0.906702
Target:  5'- gGGACGGuCGUGGAACCaGCaGUCGGCGu -3'
miRNA:   3'- -CUUGUU-GUGCCUUGGgCGaUAGUCGC- -5'
12610 5' -51.4 NC_003345.1 + 75212 0.67 0.906702
Target:  5'- aGAAUAACACcacaggugGGGcaauuCCCGCUAUCgggAGCGu -3'
miRNA:   3'- -CUUGUUGUG--------CCUu----GGGCGAUAG---UCGC- -5'
12610 5' -51.4 NC_003345.1 + 40220 0.68 0.870075
Target:  5'- -uACGAUugGGAACCCGaccucgaacUCAGCc -3'
miRNA:   3'- cuUGUUGugCCUUGGGCgau------AGUCGc -5'
12610 5' -51.4 NC_003345.1 + 33857 0.68 0.861976
Target:  5'- cGAAcCGGCACGGGucggucggcauCCCGUacUCGGCGg -3'
miRNA:   3'- -CUU-GUUGUGCCUu----------GGGCGauAGUCGC- -5'
12610 5' -51.4 NC_003345.1 + 74166 0.69 0.83626
Target:  5'- cGGGCGACcCGGAcUCCGCUcgUGGUGa -3'
miRNA:   3'- -CUUGUUGuGCCUuGGGCGAuaGUCGC- -5'
12610 5' -51.4 NC_003345.1 + 12124 0.7 0.808595
Target:  5'- gGAACAACcCGGAAgCCGCaccgUGGCGa -3'
miRNA:   3'- -CUUGUUGuGCCUUgGGCGaua-GUCGC- -5'
12610 5' -51.4 NC_003345.1 + 69803 0.7 0.798985
Target:  5'- cGGCaAACGCacAGCCCGCUGUUGGCGu -3'
miRNA:   3'- cUUG-UUGUGccUUGGGCGAUAGUCGC- -5'
12610 5' -51.4 NC_003345.1 + 23022 0.75 0.499009
Target:  5'- uGAACAAC-CaGAACCCGCUcccUCAGCa -3'
miRNA:   3'- -CUUGUUGuGcCUUGGGCGAu--AGUCGc -5'
12610 5' -51.4 NC_003345.1 + 54799 0.84 0.172746
Target:  5'- uGAGCuGAUGCGGAACuCCGCUAUCGGUGa -3'
miRNA:   3'- -CUUG-UUGUGCCUUG-GGCGAUAGUCGC- -5'
12610 5' -51.4 NC_003345.1 + 25386 1.08 0.004152
Target:  5'- uGAACAACACGGAACCCGCUAUCAGCGc -3'
miRNA:   3'- -CUUGUUGUGCCUUGGGCGAUAGUCGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.