Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12610 | 5' | -51.4 | NC_003345.1 | + | 73880 | 0.66 | 0.931105 |
Target: 5'- cGAGCAggACGUGGAACCCGUccggGGCGa -3' miRNA: 3'- -CUUGU--UGUGCCUUGGGCGauagUCGC- -5' |
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12610 | 5' | -51.4 | NC_003345.1 | + | 29500 | 0.67 | 0.906702 |
Target: 5'- gGGACGGuCGUGGAACCaGCaGUCGGCGu -3' miRNA: 3'- -CUUGUU-GUGCCUUGGgCGaUAGUCGC- -5' |
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12610 | 5' | -51.4 | NC_003345.1 | + | 75212 | 0.67 | 0.906702 |
Target: 5'- aGAAUAACACcacaggugGGGcaauuCCCGCUAUCgggAGCGu -3' miRNA: 3'- -CUUGUUGUG--------CCUu----GGGCGAUAG---UCGC- -5' |
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12610 | 5' | -51.4 | NC_003345.1 | + | 40220 | 0.68 | 0.870075 |
Target: 5'- -uACGAUugGGAACCCGaccucgaacUCAGCc -3' miRNA: 3'- cuUGUUGugCCUUGGGCgau------AGUCGc -5' |
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12610 | 5' | -51.4 | NC_003345.1 | + | 33857 | 0.68 | 0.861976 |
Target: 5'- cGAAcCGGCACGGGucggucggcauCCCGUacUCGGCGg -3' miRNA: 3'- -CUU-GUUGUGCCUu----------GGGCGauAGUCGC- -5' |
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12610 | 5' | -51.4 | NC_003345.1 | + | 74166 | 0.69 | 0.83626 |
Target: 5'- cGGGCGACcCGGAcUCCGCUcgUGGUGa -3' miRNA: 3'- -CUUGUUGuGCCUuGGGCGAuaGUCGC- -5' |
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12610 | 5' | -51.4 | NC_003345.1 | + | 12124 | 0.7 | 0.808595 |
Target: 5'- gGAACAACcCGGAAgCCGCaccgUGGCGa -3' miRNA: 3'- -CUUGUUGuGCCUUgGGCGaua-GUCGC- -5' |
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12610 | 5' | -51.4 | NC_003345.1 | + | 69803 | 0.7 | 0.798985 |
Target: 5'- cGGCaAACGCacAGCCCGCUGUUGGCGu -3' miRNA: 3'- cUUG-UUGUGccUUGGGCGAUAGUCGC- -5' |
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12610 | 5' | -51.4 | NC_003345.1 | + | 23022 | 0.75 | 0.499009 |
Target: 5'- uGAACAAC-CaGAACCCGCUcccUCAGCa -3' miRNA: 3'- -CUUGUUGuGcCUUGGGCGAu--AGUCGc -5' |
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12610 | 5' | -51.4 | NC_003345.1 | + | 54799 | 0.84 | 0.172746 |
Target: 5'- uGAGCuGAUGCGGAACuCCGCUAUCGGUGa -3' miRNA: 3'- -CUUG-UUGUGCCUUG-GGCGAUAGUCGC- -5' |
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12610 | 5' | -51.4 | NC_003345.1 | + | 25386 | 1.08 | 0.004152 |
Target: 5'- uGAACAACACGGAACCCGCUAUCAGCGc -3' miRNA: 3'- -CUUGUUGUGCCUUGGGCGAUAGUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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