miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12612 3' -51 NC_003345.1 + 35535 0.66 0.957971
Target:  5'- cCGAGGUuGCC-CUUG-GAGAUAGACc -3'
miRNA:   3'- cGCUUCAuCGGcGAGCgUUCUAUCUG- -5'
12612 3' -51 NC_003345.1 + 2341 0.66 0.953805
Target:  5'- gGCGguGUAGUCGgUgGCGAGGaAGAa -3'
miRNA:   3'- -CGCuuCAUCGGCgAgCGUUCUaUCUg -5'
12612 3' -51 NC_003345.1 + 56741 0.66 0.953374
Target:  5'- aUGGAGUA-CCGCUCGUgucgaaguccaccGAGuUAGACu -3'
miRNA:   3'- cGCUUCAUcGGCGAGCG-------------UUCuAUCUG- -5'
12612 3' -51 NC_003345.1 + 2637 0.66 0.939669
Target:  5'- cCGAAGUAGUCaCUCaGUAGGGUuucgAGGCg -3'
miRNA:   3'- cGCUUCAUCGGcGAG-CGUUCUA----UCUG- -5'
12612 3' -51 NC_003345.1 + 40677 0.67 0.9344
Target:  5'- cGCGGuGGUGGUCGUUUGUggG-UAGAg -3'
miRNA:   3'- -CGCU-UCAUCGGCGAGCGuuCuAUCUg -5'
12612 3' -51 NC_003345.1 + 21105 0.67 0.928849
Target:  5'- uCGAAGUcGCCGCUCGCGc------- -3'
miRNA:   3'- cGCUUCAuCGGCGAGCGUucuaucug -5'
12612 3' -51 NC_003345.1 + 27132 0.67 0.928849
Target:  5'- -aGAAGUucgaGGUCGC-CGCGcugaagucucAGGUAGACg -3'
miRNA:   3'- cgCUUCA----UCGGCGaGCGU----------UCUAUCUG- -5'
12612 3' -51 NC_003345.1 + 30297 0.67 0.923014
Target:  5'- aGCGGccuaccguGGUGGuUCGCUCGUggGgAUGGAa -3'
miRNA:   3'- -CGCU--------UCAUC-GGCGAGCGuuC-UAUCUg -5'
12612 3' -51 NC_003345.1 + 46100 0.67 0.923014
Target:  5'- aCGAguGGUucGCCGCUCGCAcg--GGGCu -3'
miRNA:   3'- cGCU--UCAu-CGGCGAGCGUucuaUCUG- -5'
12612 3' -51 NC_003345.1 + 69478 0.68 0.874374
Target:  5'- uGCGucacgccGCCGCccggaGCGAGAUAGACg -3'
miRNA:   3'- -CGCuucau--CGGCGag---CGUUCUAUCUG- -5'
12612 3' -51 NC_003345.1 + 9429 0.69 0.866357
Target:  5'- cCGuAGaAGCCGUuaUCGCAAuGGUAGACc -3'
miRNA:   3'- cGCuUCaUCGGCG--AGCGUU-CUAUCUG- -5'
12612 3' -51 NC_003345.1 + 27277 0.7 0.78402
Target:  5'- cGUGAGGUuGCCGUcgUCGUcaaccugagcGAGAUGGAUg -3'
miRNA:   3'- -CGCUUCAuCGGCG--AGCG----------UUCUAUCUG- -5'
12612 3' -51 NC_003345.1 + 34756 0.71 0.76367
Target:  5'- cGUGA--UGGCCGCUCGCGGG---GACu -3'
miRNA:   3'- -CGCUucAUCGGCGAGCGUUCuauCUG- -5'
12612 3' -51 NC_003345.1 + 50426 0.72 0.699682
Target:  5'- cGgGAGGUggAGCCGCUgGCgGAGAUGG-Cg -3'
miRNA:   3'- -CgCUUCA--UCGGCGAgCG-UUCUAUCuG- -5'
12612 3' -51 NC_003345.1 + 63188 0.73 0.644395
Target:  5'- uUGAAGUcGCgGCUUGCGGGGUuGACg -3'
miRNA:   3'- cGCUUCAuCGgCGAGCGUUCUAuCUG- -5'
12612 3' -51 NC_003345.1 + 62875 0.8 0.272016
Target:  5'- cGUGGAGUAGCC-CUCagagucccgaGCAGGGUAGACg -3'
miRNA:   3'- -CGCUUCAUCGGcGAG----------CGUUCUAUCUG- -5'
12612 3' -51 NC_003345.1 + 26612 1.13 0.002083
Target:  5'- uGCGAAGUAGCCGCUCGCAAGAUAGACa -3'
miRNA:   3'- -CGCUUCAUCGGCGAGCGUUCUAUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.