miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12614 3' -56.1 NC_003345.1 + 50485 0.66 0.780579
Target:  5'- cGUCGugGCCUccCUgaGCGCCGCu-- -3'
miRNA:   3'- -CGGCugCGGGaaGAagUGCGGCGuug -5'
12614 3' -56.1 NC_003345.1 + 30655 0.66 0.770839
Target:  5'- gGCuUGACGCCCUUCggaacCACGauaacaaCGuCAGCg -3'
miRNA:   3'- -CG-GCUGCGGGAAGaa---GUGCg------GC-GUUG- -5'
12614 3' -56.1 NC_003345.1 + 15081 0.66 0.760964
Target:  5'- cUCGuCGCCCgUgUUCGgagcgaagccCGCCGCGACu -3'
miRNA:   3'- cGGCuGCGGGaAgAAGU----------GCGGCGUUG- -5'
12614 3' -56.1 NC_003345.1 + 76854 0.67 0.730633
Target:  5'- aGUC-AUGUCCUUCUUCAa-UCGCAACa -3'
miRNA:   3'- -CGGcUGCGGGAAGAAGUgcGGCGUUG- -5'
12614 3' -56.1 NC_003345.1 + 72612 0.67 0.709931
Target:  5'- cGCCGGuCGCCCUUCU--ACuCCaCAACu -3'
miRNA:   3'- -CGGCU-GCGGGAAGAagUGcGGcGUUG- -5'
12614 3' -56.1 NC_003345.1 + 61425 0.67 0.68894
Target:  5'- uGUCaACGCCCUUCgc--CGCCGCuuccuGCa -3'
miRNA:   3'- -CGGcUGCGGGAAGaaguGCGGCGu----UG- -5'
12614 3' -56.1 NC_003345.1 + 32674 0.68 0.625048
Target:  5'- cGCCGAcCGCCUcUCUcgCAC-CgGCAACa -3'
miRNA:   3'- -CGGCU-GCGGGaAGAa-GUGcGgCGUUG- -5'
12614 3' -56.1 NC_003345.1 + 34240 0.69 0.603699
Target:  5'- gGCCGcucggggcgaaGCGCCCUUCggCGUGCCGuCAGu -3'
miRNA:   3'- -CGGC-----------UGCGGGAAGaaGUGCGGC-GUUg -5'
12614 3' -56.1 NC_003345.1 + 47431 0.71 0.479587
Target:  5'- uGCCGAacaGCCCgacgCUgaugaACGCCGgGACg -3'
miRNA:   3'- -CGGCUg--CGGGaa--GAag---UGCGGCgUUG- -5'
12614 3' -56.1 NC_003345.1 + 69457 0.72 0.431539
Target:  5'- cCCGACGCCgagggagcagUCUgcgUCACGCCGCcGCc -3'
miRNA:   3'- cGGCUGCGGga--------AGA---AGUGCGGCGuUG- -5'
12614 3' -56.1 NC_003345.1 + 28697 1.12 0.00075
Target:  5'- cGCCGACGCCCUUCUUCACGCCGCAACg -3'
miRNA:   3'- -CGGCUGCGGGAAGAAGUGCGGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.