miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12614 5' -53.5 NC_003345.1 + 52172 0.66 0.889145
Target:  5'- cGCAUCGAGuCGGGUucucGccGGAGUC-UCg -3'
miRNA:   3'- -CGUAGCUCcGCCUA----CuuCCUCAGcAG- -5'
12614 5' -53.5 NC_003345.1 + 6901 0.66 0.881833
Target:  5'- gGCAUCGAc-CGGA---AGGGGUUGUCg -3'
miRNA:   3'- -CGUAGCUccGCCUacuUCCUCAGCAG- -5'
12614 5' -53.5 NC_003345.1 + 42858 0.66 0.866468
Target:  5'- -uGUCGAGGCcgacGAUGuGGGGuGUCGUa -3'
miRNA:   3'- cgUAGCUCCGc---CUAC-UUCCuCAGCAg -5'
12614 5' -53.5 NC_003345.1 + 7209 0.67 0.858428
Target:  5'- gGC-UUGAGGUGGAacauaUGuccaccacGGGAGUCGUUc -3'
miRNA:   3'- -CGuAGCUCCGCCU-----ACu-------UCCUCAGCAG- -5'
12614 5' -53.5 NC_003345.1 + 48669 0.67 0.850158
Target:  5'- -uGUgGAcuGGUGGugacuuUGAAGGAGUCGUa -3'
miRNA:   3'- cgUAgCU--CCGCCu-----ACUUCCUCAGCAg -5'
12614 5' -53.5 NC_003345.1 + 30517 0.67 0.836468
Target:  5'- aCAUCGAGGUGGGUuguccacuucugcucGAaagAGaGGUCGUCc -3'
miRNA:   3'- cGUAGCUCCGCCUA---------------CU---UCcUCAGCAG- -5'
12614 5' -53.5 NC_003345.1 + 27892 0.68 0.814944
Target:  5'- aGUAUCG-GGC-GAUGAAGGcgcAGUCGg- -3'
miRNA:   3'- -CGUAGCuCCGcCUACUUCC---UCAGCag -5'
12614 5' -53.5 NC_003345.1 + 44076 0.68 0.805651
Target:  5'- aGgAUUGAGGCuGGUGAacaGGGAGaCGUUg -3'
miRNA:   3'- -CgUAGCUCCGcCUACU---UCCUCaGCAG- -5'
12614 5' -53.5 NC_003345.1 + 20340 0.68 0.805651
Target:  5'- uCAUCGAaggagacagcGGCGGccccaccgGAGGGAgcGUCGUCg -3'
miRNA:   3'- cGUAGCU----------CCGCCua------CUUCCU--CAGCAG- -5'
12614 5' -53.5 NC_003345.1 + 16348 0.68 0.779709
Target:  5'- cGCuUCGAGagggagcuggaacgaGCGGAUGAuuGGGAugcuccgaugccgGUCGUCg -3'
miRNA:   3'- -CGuAGCUC---------------CGCCUACU--UCCU-------------CAGCAG- -5'
12614 5' -53.5 NC_003345.1 + 8530 0.69 0.72584
Target:  5'- uCAUCGAGGUGGugcuUGA---GGUCGUCc -3'
miRNA:   3'- cGUAGCUCCGCCu---ACUuccUCAGCAG- -5'
12614 5' -53.5 NC_003345.1 + 49368 0.69 0.715341
Target:  5'- aGCAUCGAGGUGGA-GuuGGaAGaCGUUu -3'
miRNA:   3'- -CGUAGCUCCGCCUaCuuCC-UCaGCAG- -5'
12614 5' -53.5 NC_003345.1 + 77314 0.77 0.312925
Target:  5'- -aGUCGGGGuCGGAUGGggAGGGGUCGg- -3'
miRNA:   3'- cgUAGCUCC-GCCUACU--UCCUCAGCag -5'
12614 5' -53.5 NC_003345.1 + 28731 1.12 0.001429
Target:  5'- gGCAUCGAGGCGGAUGAAGGAGUCGUCa -3'
miRNA:   3'- -CGUAGCUCCGCCUACUUCCUCAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.