miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12616 5' -54.3 NC_003345.1 + 21230 0.66 0.881095
Target:  5'- gUUCGCCaCCGACGAC-AACGgcgcUCCGa-- -3'
miRNA:   3'- -AGGUGG-GGCUGCUGcUUGU----AGGCaag -5'
12616 5' -54.3 NC_003345.1 + 14656 0.66 0.881095
Target:  5'- uUCCGgUgCGACGugGAGCGUgUCGUg- -3'
miRNA:   3'- -AGGUgGgGCUGCugCUUGUA-GGCAag -5'
12616 5' -54.3 NC_003345.1 + 51424 0.66 0.881095
Target:  5'- cUCCGgCCCGgagacaACGGugUGAACAUCCGa-- -3'
miRNA:   3'- -AGGUgGGGC------UGCU--GCUUGUAGGCaag -5'
12616 5' -54.3 NC_003345.1 + 16141 0.66 0.881095
Target:  5'- uUCCAauucCUCCGcugGugGAACAaCCGUUCg -3'
miRNA:   3'- -AGGU----GGGGCug-CugCUUGUaGGCAAG- -5'
12616 5' -54.3 NC_003345.1 + 14529 0.66 0.880357
Target:  5'- uUCCACCCCcuuucgggaagugGACGACGGc---CCGUa- -3'
miRNA:   3'- -AGGUGGGG-------------CUGCUGCUuguaGGCAag -5'
12616 5' -54.3 NC_003345.1 + 55436 0.66 0.873608
Target:  5'- cCCACCgCCGuuaccucCGAgaGAACGaCCGUUCg -3'
miRNA:   3'- aGGUGG-GGCu------GCUg-CUUGUaGGCAAG- -5'
12616 5' -54.3 NC_003345.1 + 23420 0.66 0.873608
Target:  5'- --aACCCCguGAUGugGAagGCAUCCGagUUCg -3'
miRNA:   3'- aggUGGGG--CUGCugCU--UGUAGGC--AAG- -5'
12616 5' -54.3 NC_003345.1 + 24444 0.66 0.873608
Target:  5'- -aCAUCCCGGCGcUGAACA-CCGg-- -3'
miRNA:   3'- agGUGGGGCUGCuGCUUGUaGGCaag -5'
12616 5' -54.3 NC_003345.1 + 25953 0.66 0.873608
Target:  5'- -aCGCCCgGACaaccgcauCGAGCAUCCGg-- -3'
miRNA:   3'- agGUGGGgCUGcu------GCUUGUAGGCaag -5'
12616 5' -54.3 NC_003345.1 + 62123 0.66 0.873608
Target:  5'- gUCCacgGCCCCGACaACGAGC--CUGUUa -3'
miRNA:   3'- -AGG---UGGGGCUGcUGCUUGuaGGCAAg -5'
12616 5' -54.3 NC_003345.1 + 28812 0.66 0.857932
Target:  5'- aUCUACCuuGAgGGCGAguucuACGgguggCUGUUCg -3'
miRNA:   3'- -AGGUGGggCUgCUGCU-----UGUa----GGCAAG- -5'
12616 5' -54.3 NC_003345.1 + 9622 0.66 0.857932
Target:  5'- aCgACCCgGACG--GAACA-CCGUUCg -3'
miRNA:   3'- aGgUGGGgCUGCugCUUGUaGGCAAG- -5'
12616 5' -54.3 NC_003345.1 + 73795 0.66 0.857932
Target:  5'- gUCCugCUCGAacaGCGAAaCGUCCGUc- -3'
miRNA:   3'- -AGGugGGGCUgc-UGCUU-GUAGGCAag -5'
12616 5' -54.3 NC_003345.1 + 34739 0.66 0.857124
Target:  5'- --aACCCCGACGACGuucccguGAUggCCGcUCg -3'
miRNA:   3'- aggUGGGGCUGCUGC-------UUGuaGGCaAG- -5'
12616 5' -54.3 NC_003345.1 + 51258 0.66 0.849755
Target:  5'- gCgACCUCGAUGugaacGCGAGCGUCCaagUCg -3'
miRNA:   3'- aGgUGGGGCUGC-----UGCUUGUAGGca-AG- -5'
12616 5' -54.3 NC_003345.1 + 55616 0.66 0.849755
Target:  5'- cCCACCaCCGcCgGACGAGUAUUCGUUg -3'
miRNA:   3'- aGGUGG-GGCuG-CUGCUUGUAGGCAAg -5'
12616 5' -54.3 NC_003345.1 + 32924 0.66 0.849755
Target:  5'- cUCACCgUGgggucaacgacGCGGCGAACGUCCucgcGUUCa -3'
miRNA:   3'- aGGUGGgGC-----------UGCUGCUUGUAGG----CAAG- -5'
12616 5' -54.3 NC_003345.1 + 50366 0.66 0.849755
Target:  5'- aCCGCCCCGGCGGUGGugG-CgGUg- -3'
miRNA:   3'- aGGUGGGGCUGCUGCUugUaGgCAag -5'
12616 5' -54.3 NC_003345.1 + 41491 0.67 0.841363
Target:  5'- cUCU-CCCCGACGACcGACGaCCGg-- -3'
miRNA:   3'- -AGGuGGGGCUGCUGcUUGUaGGCaag -5'
12616 5' -54.3 NC_003345.1 + 40168 0.67 0.841363
Target:  5'- aCUACCuCCGACGAgccgcguuCGAGCcgCUGUaUCa -3'
miRNA:   3'- aGGUGG-GGCUGCU--------GCUUGuaGGCA-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.