miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12616 5' -54.3 NC_003345.1 + 24444 0.66 0.873608
Target:  5'- -aCAUCCCGGCGcUGAACA-CCGg-- -3'
miRNA:   3'- agGUGGGGCUGCuGCUUGUaGGCaag -5'
12616 5' -54.3 NC_003345.1 + 41491 0.67 0.841363
Target:  5'- cUCU-CCCCGACGACcGACGaCCGg-- -3'
miRNA:   3'- -AGGuGGGGCUGCUGcUUGUaGGCaag -5'
12616 5' -54.3 NC_003345.1 + 32924 0.66 0.849755
Target:  5'- cUCACCgUGgggucaacgacGCGGCGAACGUCCucgcGUUCa -3'
miRNA:   3'- aGGUGGgGC-----------UGCUGCUUGUAGG----CAAG- -5'
12616 5' -54.3 NC_003345.1 + 55616 0.66 0.849755
Target:  5'- cCCACCaCCGcCgGACGAGUAUUCGUUg -3'
miRNA:   3'- aGGUGG-GGCuG-CUGCUUGUAGGCAAg -5'
12616 5' -54.3 NC_003345.1 + 34739 0.66 0.857124
Target:  5'- --aACCCCGACGACGuucccguGAUggCCGcUCg -3'
miRNA:   3'- aggUGGGGCUGCUGC-------UUGuaGGCaAG- -5'
12616 5' -54.3 NC_003345.1 + 73795 0.66 0.857932
Target:  5'- gUCCugCUCGAacaGCGAAaCGUCCGUc- -3'
miRNA:   3'- -AGGugGGGCUgc-UGCUU-GUAGGCAag -5'
12616 5' -54.3 NC_003345.1 + 9622 0.66 0.857932
Target:  5'- aCgACCCgGACG--GAACA-CCGUUCg -3'
miRNA:   3'- aGgUGGGgCUGCugCUUGUaGGCAAG- -5'
12616 5' -54.3 NC_003345.1 + 28812 0.66 0.857932
Target:  5'- aUCUACCuuGAgGGCGAguucuACGgguggCUGUUCg -3'
miRNA:   3'- -AGGUGGggCUgCUGCU-----UGUa----GGCAAG- -5'
12616 5' -54.3 NC_003345.1 + 23420 0.66 0.873608
Target:  5'- --aACCCCguGAUGugGAagGCAUCCGagUUCg -3'
miRNA:   3'- aggUGGGG--CUGCugCU--UGUAGGC--AAG- -5'
12616 5' -54.3 NC_003345.1 + 71169 0.67 0.821285
Target:  5'- gCCGCCCCGAuaaucagggaauuaCGGCGGcuACGauugUCGUUCu -3'
miRNA:   3'- aGGUGGGGCU--------------GCUGCU--UGUa---GGCAAG- -5'
12616 5' -54.3 NC_003345.1 + 21561 0.67 0.821285
Target:  5'- uUCCugCCCGACGACGcggagagcgaagacGACua-CGUg- -3'
miRNA:   3'- -AGGugGGGCUGCUGC--------------UUGuagGCAag -5'
12616 5' -54.3 NC_003345.1 + 39260 0.67 0.814972
Target:  5'- aUUgACCCCGACGACguGAGCcaaauUCUGUg- -3'
miRNA:   3'- -AGgUGGGGCUGCUG--CUUGu----AGGCAag -5'
12616 5' -54.3 NC_003345.1 + 48588 0.7 0.631897
Target:  5'- aCCGCCCCGGCcagcCGuuCAcUCCGUUCu -3'
miRNA:   3'- aGGUGGGGCUGcu--GCuuGU-AGGCAAG- -5'
12616 5' -54.3 NC_003345.1 + 56002 0.7 0.67355
Target:  5'- cCCACCaCCGACGACGAgaacuucaacuucACuaacUCCGg-- -3'
miRNA:   3'- aGGUGG-GGCUGCUGCU-------------UGu---AGGCaag -5'
12616 5' -54.3 NC_003345.1 + 10445 0.69 0.727072
Target:  5'- uUUCACCUCGcUGACGAcCuguuUCCGUUCc -3'
miRNA:   3'- -AGGUGGGGCuGCUGCUuGu---AGGCAAG- -5'
12616 5' -54.3 NC_003345.1 + 5699 0.68 0.757555
Target:  5'- gCCAgCUCCGACGugGAaGCAgucacgaCGUUCg -3'
miRNA:   3'- aGGU-GGGGCUGCugCU-UGUag-----GCAAG- -5'
12616 5' -54.3 NC_003345.1 + 29570 0.68 0.767488
Target:  5'- aCUACgCCGACGAagccGCGUCgGUUCa -3'
miRNA:   3'- aGGUGgGGCUGCUgcu-UGUAGgCAAG- -5'
12616 5' -54.3 NC_003345.1 + 20144 0.68 0.786948
Target:  5'- gUCCGuCCCCGGCGAgCGGaugagugguACggUCGUUCc -3'
miRNA:   3'- -AGGU-GGGGCUGCU-GCU---------UGuaGGCAAG- -5'
12616 5' -54.3 NC_003345.1 + 36477 0.67 0.796455
Target:  5'- uUCUACCggaCgGugGACGGGCAaCUGUUCc -3'
miRNA:   3'- -AGGUGG---GgCugCUGCUUGUaGGCAAG- -5'
12616 5' -54.3 NC_003345.1 + 75621 0.67 0.796455
Target:  5'- cUCCGCCgCaacuGCGGCGAGCuguUCCGUc- -3'
miRNA:   3'- -AGGUGGgGc---UGCUGCUUGu--AGGCAag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.