miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12617 5' -45.4 NC_003345.1 + 68258 0.66 0.999402
Target:  5'- cGCugGAGAUUC-GAGAcggcucgAUGCCGGu- -3'
miRNA:   3'- -CGugCUUUAGGuCUCUa------UACGGUUuu -5'
12617 5' -45.4 NC_003345.1 + 27171 0.66 0.999246
Target:  5'- gGUGCGAAGUagCCGGAGugcuUGCCGu-- -3'
miRNA:   3'- -CGUGCUUUA--GGUCUCuau-ACGGUuuu -5'
12617 5' -45.4 NC_003345.1 + 51968 0.66 0.998824
Target:  5'- aGCugGAGAUUCAGuuuaacGAUgGUGCUGGAAa -3'
miRNA:   3'- -CGugCUUUAGGUCu-----CUA-UACGGUUUU- -5'
12617 5' -45.4 NC_003345.1 + 870 0.66 0.998547
Target:  5'- aUACGGAAUgUAGGGGgcggGCCGGAAa -3'
miRNA:   3'- cGUGCUUUAgGUCUCUaua-CGGUUUU- -5'
12617 5' -45.4 NC_003345.1 + 12062 0.67 0.997364
Target:  5'- cCACGGAcuguugaacGUCCAGAGAa--GCCGAc- -3'
miRNA:   3'- cGUGCUU---------UAGGUCUCUauaCGGUUuu -5'
12617 5' -45.4 NC_003345.1 + 19253 0.67 0.996824
Target:  5'- -aACGGAGUCCAGAacGAguccgGUGUCAGc- -3'
miRNA:   3'- cgUGCUUUAGGUCU--CUa----UACGGUUuu -5'
12617 5' -45.4 NC_003345.1 + 30765 0.68 0.996196
Target:  5'- -aGCGGcucAAUUCGGGGAUGUGUgGAAAg -3'
miRNA:   3'- cgUGCU---UUAGGUCUCUAUACGgUUUU- -5'
12617 5' -45.4 NC_003345.1 + 23732 0.68 0.992588
Target:  5'- -gACGAcg-CCGGAGAcgAUGCCGAc- -3'
miRNA:   3'- cgUGCUuuaGGUCUCUa-UACGGUUuu -5'
12617 5' -45.4 NC_003345.1 + 58610 0.68 0.992588
Target:  5'- uCACGAuggacuUCCAGAGGaAUGUCAAu- -3'
miRNA:   3'- cGUGCUuu----AGGUCUCUaUACGGUUuu -5'
12617 5' -45.4 NC_003345.1 + 60478 0.69 0.988408
Target:  5'- uUACG-AAUCCAGAGAgaagGCCGu-- -3'
miRNA:   3'- cGUGCuUUAGGUCUCUaua-CGGUuuu -5'
12617 5' -45.4 NC_003345.1 + 57957 0.7 0.984734
Target:  5'- uGCuuGAAGUCCAGAGcguaGUGCCc--- -3'
miRNA:   3'- -CGugCUUUAGGUCUCua--UACGGuuuu -5'
12617 5' -45.4 NC_003345.1 + 28419 0.71 0.964768
Target:  5'- -gGCGAGcGUCCuGAGAcgUAUGCCGAGu -3'
miRNA:   3'- cgUGCUU-UAGGuCUCU--AUACGGUUUu -5'
12617 5' -45.4 NC_003345.1 + 72366 0.73 0.931212
Target:  5'- cGCACGAGGUCgCGGAGuUGUGguucaCCAAAGa -3'
miRNA:   3'- -CGUGCUUUAG-GUCUCuAUAC-----GGUUUU- -5'
12617 5' -45.4 NC_003345.1 + 76466 0.78 0.712238
Target:  5'- aGCucaGAAAUCCAGAGAagAUGCCAc-- -3'
miRNA:   3'- -CGug-CUUUAGGUCUCUa-UACGGUuuu -5'
12617 5' -45.4 NC_003345.1 + 31166 1.09 0.012974
Target:  5'- gGCACGAAAUCCAGAGAUAUGCCAAAAu -3'
miRNA:   3'- -CGUGCUUUAGGUCUCUAUACGGUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.