miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12618 5' -53 NC_003345.1 + 52128 0.66 0.902868
Target:  5'- --aGAGCCGAgauuacuucGAGuggGGACGCaacgacGCCu -3'
miRNA:   3'- uaaCUCGGCUaa-------CUCua-CCUGCG------CGG- -5'
12618 5' -53 NC_003345.1 + 68200 0.66 0.902868
Target:  5'- --aGAGaaGcacgGAGcUGGACGUGCCg -3'
miRNA:   3'- uaaCUCggCuaa-CUCuACCUGCGCGG- -5'
12618 5' -53 NC_003345.1 + 66463 0.66 0.895967
Target:  5'- --aGAacGUCGAUUGGGAUGaauaccGGCGUGCUu -3'
miRNA:   3'- uaaCU--CGGCUAACUCUAC------CUGCGCGG- -5'
12618 5' -53 NC_003345.1 + 2817 0.66 0.888801
Target:  5'- -aUGAGCCaacgcGAGAaGGACGC-CCu -3'
miRNA:   3'- uaACUCGGcuaa-CUCUaCCUGCGcGG- -5'
12618 5' -53 NC_003345.1 + 42190 0.66 0.888801
Target:  5'- --gGAGCCGAgcGAGAaGcGCGUgGCCg -3'
miRNA:   3'- uaaCUCGGCUaaCUCUaCcUGCG-CGG- -5'
12618 5' -53 NC_003345.1 + 62839 0.66 0.888801
Target:  5'- -gUGAGCUGAUUGAcGA---GCGCGUg -3'
miRNA:   3'- uaACUCGGCUAACU-CUaccUGCGCGg -5'
12618 5' -53 NC_003345.1 + 24268 0.66 0.873691
Target:  5'- uUUGAGCCGG------UGGACGUaGCCa -3'
miRNA:   3'- uAACUCGGCUaacucuACCUGCG-CGG- -5'
12618 5' -53 NC_003345.1 + 38157 0.67 0.838785
Target:  5'- -gUGAcGCCGAcgugaaguggagUGAGAUGGGCGaGCg -3'
miRNA:   3'- uaACU-CGGCUa-----------ACUCUACCUGCgCGg -5'
12618 5' -53 NC_003345.1 + 36696 0.68 0.784467
Target:  5'- --cGAGauGAUUGAGAaGGACGUuCCg -3'
miRNA:   3'- uaaCUCggCUAACUCUaCCUGCGcGG- -5'
12618 5' -53 NC_003345.1 + 35889 0.69 0.743792
Target:  5'- uUUGAGCUGGaUGGGGUGGuuggaaGCGUUg -3'
miRNA:   3'- uAACUCGGCUaACUCUACCug----CGCGG- -5'
12618 5' -53 NC_003345.1 + 12659 0.71 0.635799
Target:  5'- -gUGAGCCGGUcGAaccGAguuGAUGCGCCg -3'
miRNA:   3'- uaACUCGGCUAaCU---CUac-CUGCGCGG- -5'
12618 5' -53 NC_003345.1 + 39952 0.71 0.602855
Target:  5'- -gUGGGCuuCGAcccaucGAGGuUGGACGCGCCa -3'
miRNA:   3'- uaACUCG--GCUaa----CUCU-ACCUGCGCGG- -5'
12618 5' -53 NC_003345.1 + 32278 1.11 0.001687
Target:  5'- gAUUGAGCCGAUUGAGAUGGACGCGCCg -3'
miRNA:   3'- -UAACUCGGCUAACUCUACCUGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.