miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12619 3' -47.4 NC_003345.1 + 45453 0.66 0.99318
Target:  5'- aGGUGAGCgagaaggCGGCG-GUUCAGCU-CGGu -3'
miRNA:   3'- -CUAUUCGa------GUCGUuCGAGUUGAaGCU- -5'
12619 3' -47.4 NC_003345.1 + 60977 0.66 0.992042
Target:  5'- --aAGGgUCAGCuugAGGCUCuugaggacGACUUCGAc -3'
miRNA:   3'- cuaUUCgAGUCG---UUCGAG--------UUGAAGCU- -5'
12619 3' -47.4 NC_003345.1 + 71589 0.66 0.992042
Target:  5'- --aAAGCUCGucgggggacGgAAGCUCAACcUCGGg -3'
miRNA:   3'- cuaUUCGAGU---------CgUUCGAGUUGaAGCU- -5'
12619 3' -47.4 NC_003345.1 + 10002 0.67 0.985912
Target:  5'- aGUGAGCgaaAGacgaugggaGAGUUCGGCUUCGAg -3'
miRNA:   3'- cUAUUCGag-UCg--------UUCGAGUUGAAGCU- -5'
12619 3' -47.4 NC_003345.1 + 9960 0.67 0.985141
Target:  5'- ----cGCUCGGgAAGCUCGucgaggauuucuuCUUCGAg -3'
miRNA:   3'- cuauuCGAGUCgUUCGAGUu------------GAAGCU- -5'
12619 3' -47.4 NC_003345.1 + 21005 0.67 0.983926
Target:  5'- ---cAGCggcGCGAGCggCGACUUCGAg -3'
miRNA:   3'- cuauUCGaguCGUUCGa-GUUGAAGCU- -5'
12619 3' -47.4 NC_003345.1 + 47329 0.67 0.983926
Target:  5'- ---cGGCUCAGCAGGCcgcucUCAuCUUCc- -3'
miRNA:   3'- cuauUCGAGUCGUUCG-----AGUuGAAGcu -5'
12619 3' -47.4 NC_003345.1 + 1562 0.68 0.973813
Target:  5'- -cUAAGgaCAGCcGGUUCGacaGCUUCGAg -3'
miRNA:   3'- cuAUUCgaGUCGuUCGAGU---UGAAGCU- -5'
12619 3' -47.4 NC_003345.1 + 28693 0.68 0.967306
Target:  5'- --gAGGUUCAGCGccucGGCUucuaugucaacCGGCUUCGAg -3'
miRNA:   3'- cuaUUCGAGUCGU----UCGA-----------GUUGAAGCU- -5'
12619 3' -47.4 NC_003345.1 + 69141 0.7 0.922191
Target:  5'- ----cGCUCAGCuucucccacucgccGGGgUCAGCUUCGAc -3'
miRNA:   3'- cuauuCGAGUCG--------------UUCgAGUUGAAGCU- -5'
12619 3' -47.4 NC_003345.1 + 32578 0.71 0.917745
Target:  5'- ----cGCUCGGguGGCUCAccGCaUCGAg -3'
miRNA:   3'- cuauuCGAGUCguUCGAGU--UGaAGCU- -5'
12619 3' -47.4 NC_003345.1 + 71771 0.72 0.86528
Target:  5'- uGAUAAGCUCAuCAAGCUCuaccaauccGGCUUCc- -3'
miRNA:   3'- -CUAUUCGAGUcGUUCGAG---------UUGAAGcu -5'
12619 3' -47.4 NC_003345.1 + 20036 0.72 0.86528
Target:  5'- cGAUGAGuCUCGGCucaccAAGCUCGAUUugaaccUCGAa -3'
miRNA:   3'- -CUAUUC-GAGUCG-----UUCGAGUUGA------AGCU- -5'
12619 3' -47.4 NC_003345.1 + 74387 0.74 0.799839
Target:  5'- --aGAGCgUCAGC-GGCUCAAUUUCGu -3'
miRNA:   3'- cuaUUCG-AGUCGuUCGAGUUGAAGCu -5'
12619 3' -47.4 NC_003345.1 + 53076 0.75 0.747078
Target:  5'- --cAAGCUCcuccAGCGAG-UCAACUUCGAg -3'
miRNA:   3'- cuaUUCGAG----UCGUUCgAGUUGAAGCU- -5'
12619 3' -47.4 NC_003345.1 + 46696 0.75 0.702473
Target:  5'- cGGUGAGCcgGGCcuGUUCAACUUCGAg -3'
miRNA:   3'- -CUAUUCGagUCGuuCGAGUUGAAGCU- -5'
12619 3' -47.4 NC_003345.1 + 32512 1.11 0.006149
Target:  5'- cGAUAAGCUCAGCAAGCUCAACUUCGAg -3'
miRNA:   3'- -CUAUUCGAGUCGUUCGAGUUGAAGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.