miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12619 5' -54 NC_003345.1 + 32546 1.13 0.001119
Target:  5'- gAGCGGAAGAUGCUCACCGAGUUCGCCa -3'
miRNA:   3'- -UCGCCUUCUACGAGUGGCUCAAGCGG- -5'
12619 5' -54 NC_003345.1 + 43947 0.77 0.271973
Target:  5'- gAGCGGAAGAUucugaacaaGCUCgacgagaACCGGGaUUCGCCc -3'
miRNA:   3'- -UCGCCUUCUA---------CGAG-------UGGCUC-AAGCGG- -5'
12619 5' -54 NC_003345.1 + 48152 0.76 0.339587
Target:  5'- -cCGGAAGAagaccaGCUCAUCGAGUUCGUUa -3'
miRNA:   3'- ucGCCUUCUa-----CGAGUGGCUCAAGCGG- -5'
12619 5' -54 NC_003345.1 + 70171 0.76 0.34772
Target:  5'- cGCGGAAGcgugaGCUUcuuGCUGAGUUCGCUg -3'
miRNA:   3'- uCGCCUUCua---CGAG---UGGCUCAAGCGG- -5'
12619 5' -54 NC_003345.1 + 52083 0.72 0.516021
Target:  5'- cAGCGGGAcguuccGGUgGCUCAggauaUUGAGUUCGCCu -3'
miRNA:   3'- -UCGCCUU------CUA-CGAGU-----GGCUCAAGCGG- -5'
12619 5' -54 NC_003345.1 + 16326 0.72 0.547378
Target:  5'- gAGCGGAugauugGGAUGCUCcgauGCCGG--UCGUCg -3'
miRNA:   3'- -UCGCCU------UCUACGAG----UGGCUcaAGCGG- -5'
12619 5' -54 NC_003345.1 + 21459 0.71 0.611624
Target:  5'- cAGuuGccGAgGCUCACCGGGUcgUCGCCc -3'
miRNA:   3'- -UCgcCuuCUaCGAGUGGCUCA--AGCGG- -5'
12619 5' -54 NC_003345.1 + 61643 0.7 0.676459
Target:  5'- aAGCuGGAGAUGgaCACCGAGgaaGCg -3'
miRNA:   3'- -UCGcCUUCUACgaGUGGCUCaagCGg -5'
12619 5' -54 NC_003345.1 + 38561 0.69 0.687182
Target:  5'- -aUGGAAGAcggaacccUGCUCuGCCGAGgUCGCg -3'
miRNA:   3'- ucGCCUUCU--------ACGAG-UGGCUCaAGCGg -5'
12619 5' -54 NC_003345.1 + 35472 0.69 0.697853
Target:  5'- --gGGAAGAaGCUCGCCGuAGaaccCGCCu -3'
miRNA:   3'- ucgCCUUCUaCGAGUGGC-UCaa--GCGG- -5'
12619 5' -54 NC_003345.1 + 6341 0.69 0.729453
Target:  5'- aAGUGGggGAaGCUgACuguCGAGUUCaCCg -3'
miRNA:   3'- -UCGCCuuCUaCGAgUG---GCUCAAGcGG- -5'
12619 5' -54 NC_003345.1 + 75688 0.67 0.799383
Target:  5'- cGGUGGggGAgaagcgGCgaugaGCCGAGcUUCGaCCc -3'
miRNA:   3'- -UCGCCuuCUa-----CGag---UGGCUC-AAGC-GG- -5'
12619 5' -54 NC_003345.1 + 41346 0.67 0.80878
Target:  5'- aGGCcG-AGGUGCgcCACCGAGUUCGa- -3'
miRNA:   3'- -UCGcCuUCUACGa-GUGGCUCAAGCgg -5'
12619 5' -54 NC_003345.1 + 5446 0.67 0.80878
Target:  5'- uAGUGGAgauugAGuUGUUCACCGA---CGCCg -3'
miRNA:   3'- -UCGCCU-----UCuACGAGUGGCUcaaGCGG- -5'
12619 5' -54 NC_003345.1 + 7767 0.67 0.817999
Target:  5'- -aCGGAAGuUGCUaCACCGGa--CGCCg -3'
miRNA:   3'- ucGCCUUCuACGA-GUGGCUcaaGCGG- -5'
12619 5' -54 NC_003345.1 + 13406 0.67 0.817999
Target:  5'- cGGCGGAAca-----GCCGAGUUCGUCu -3'
miRNA:   3'- -UCGCCUUcuacgagUGGCUCAAGCGG- -5'
12619 5' -54 NC_003345.1 + 45033 0.67 0.827028
Target:  5'- gAGUGGAAca-GCUCAUCGAG-UCGUUu -3'
miRNA:   3'- -UCGCCUUcuaCGAGUGGCUCaAGCGG- -5'
12619 5' -54 NC_003345.1 + 23430 0.67 0.835859
Target:  5'- uGUGGAAG--GCau-CCGAGUUCGCg -3'
miRNA:   3'- uCGCCUUCuaCGaguGGCUCAAGCGg -5'
12619 5' -54 NC_003345.1 + 58907 0.66 0.856191
Target:  5'- uGCGGAacacgacggcguuguGGAuaUGUUCAcuCCGAuUUCGCCu -3'
miRNA:   3'- uCGCCU---------------UCU--ACGAGU--GGCUcAAGCGG- -5'
12619 5' -54 NC_003345.1 + 13463 0.66 0.859456
Target:  5'- uGUGGGAGGUGUggguuguaucgaCGCCGAGcUUGUCc -3'
miRNA:   3'- uCGCCUUCUACGa-----------GUGGCUCaAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.