miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12623 5' -50.8 NC_003345.1 + 14397 0.66 0.954553
Target:  5'- -cGUUCucgGCUAUCC-UGAGCUAcGGGCc -3'
miRNA:   3'- guCGAG---CGAUAGGuGCUCGAUuUCUG- -5'
12623 5' -50.8 NC_003345.1 + 69793 0.66 0.954553
Target:  5'- aCAGCcCGCUGUUgGCGucCUGAuggaGGACg -3'
miRNA:   3'- -GUCGaGCGAUAGgUGCucGAUU----UCUG- -5'
12623 5' -50.8 NC_003345.1 + 20827 0.66 0.954553
Target:  5'- aCAGCUCgGCUGUaaaC-CGAGUguAGGGCg -3'
miRNA:   3'- -GUCGAG-CGAUAg--GuGCUCGauUUCUG- -5'
12623 5' -50.8 NC_003345.1 + 19046 0.66 0.935151
Target:  5'- -uGCUCGUUA-CgACGGGUagcaUGAAGACg -3'
miRNA:   3'- guCGAGCGAUaGgUGCUCG----AUUUCUG- -5'
12623 5' -50.8 NC_003345.1 + 14479 0.67 0.923737
Target:  5'- uCGGCUgGCgacCCACGAGCgccguGGAa -3'
miRNA:   3'- -GUCGAgCGauaGGUGCUCGauu--UCUg -5'
12623 5' -50.8 NC_003345.1 + 62098 0.67 0.923737
Target:  5'- uUAGCaucgagUCGCuUAUCUACGAuGCUcAGGGCg -3'
miRNA:   3'- -GUCG------AGCG-AUAGGUGCU-CGAuUUCUG- -5'
12623 5' -50.8 NC_003345.1 + 75097 0.67 0.913777
Target:  5'- aAGUUCGCU-UCCucagucuccucucggACGAGCUGaccguccucgGAGACg -3'
miRNA:   3'- gUCGAGCGAuAGG---------------UGCUCGAU----------UUCUG- -5'
12623 5' -50.8 NC_003345.1 + 70078 0.68 0.874838
Target:  5'- aAGCUcaCGCU-UCCGCGAGaUAGAGAa -3'
miRNA:   3'- gUCGA--GCGAuAGGUGCUCgAUUUCUg -5'
12623 5' -50.8 NC_003345.1 + 29928 0.69 0.849859
Target:  5'- -cGCUCGgcguuCUGUCC-UGAGCUAcGGACu -3'
miRNA:   3'- guCGAGC-----GAUAGGuGCUCGAUuUCUG- -5'
12623 5' -50.8 NC_003345.1 + 33347 0.7 0.803602
Target:  5'- aCGGCgUGU--UCCGCGAGCUuguGGACg -3'
miRNA:   3'- -GUCGaGCGauAGGUGCUCGAuu-UCUG- -5'
12623 5' -50.8 NC_003345.1 + 17918 0.7 0.783715
Target:  5'- aGGCUcCGUg--CCACGAGCUGAuguGAUu -3'
miRNA:   3'- gUCGA-GCGauaGGUGCUCGAUUu--CUG- -5'
12623 5' -50.8 NC_003345.1 + 4320 0.7 0.783715
Target:  5'- aGGUggCGCUAUCCcCGGuCUAAAGACu -3'
miRNA:   3'- gUCGa-GCGAUAGGuGCUcGAUUUCUG- -5'
12623 5' -50.8 NC_003345.1 + 39808 0.75 0.542485
Target:  5'- uCAGCUCGUUGUCUugGAGgUUGacccacGAGACu -3'
miRNA:   3'- -GUCGAGCGAUAGGugCUC-GAU------UUCUG- -5'
12623 5' -50.8 NC_003345.1 + 35831 1.11 0.002917
Target:  5'- uCAGCUCGCUAUCCACGAGCUAAAGACg -3'
miRNA:   3'- -GUCGAGCGAUAGGUGCUCGAUUUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.