miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12625 5' -43.5 NC_003345.1 + 58353 0.66 0.999966
Target:  5'- -gAUUAUcaGCGGCaGAACGUCCGAc-- -3'
miRNA:   3'- caUGAUA--UGCUGcUUUGUAGGCUuaa -5'
12625 5' -43.5 NC_003345.1 + 68902 0.67 0.999913
Target:  5'- -gACaGUACGGCGcaccgcGCGUCCGAAc- -3'
miRNA:   3'- caUGaUAUGCUGCuu----UGUAGGCUUaa -5'
12625 5' -43.5 NC_003345.1 + 13414 0.67 0.999883
Target:  5'- -gAUUGUccCGGCGGAACAgCCGAGUUc -3'
miRNA:   3'- caUGAUAu-GCUGCUUUGUaGGCUUAA- -5'
12625 5' -43.5 NC_003345.1 + 52332 0.68 0.99976
Target:  5'- -gGCU--ACGACGAGACGcacgacuucagcggcUCCGAAg- -3'
miRNA:   3'- caUGAuaUGCUGCUUUGU---------------AGGCUUaa -5'
12625 5' -43.5 NC_003345.1 + 72064 0.68 0.999733
Target:  5'- aGUGCggGUGCGAUGAAgcuggaagguACGUUCGAGc- -3'
miRNA:   3'- -CAUGa-UAUGCUGCUU----------UGUAGGCUUaa -5'
12625 5' -43.5 NC_003345.1 + 64873 0.68 0.999645
Target:  5'- -----cUACGACGAAACugcuggaacgacuGUCCGAGUg -3'
miRNA:   3'- caugauAUGCUGCUUUG-------------UAGGCUUAa -5'
12625 5' -43.5 NC_003345.1 + 36825 0.68 0.999282
Target:  5'- -gGCUGUACGGCuGAACAgcccgCUGAGUc -3'
miRNA:   3'- caUGAUAUGCUGcUUUGUa----GGCUUAa -5'
12625 5' -43.5 NC_003345.1 + 47238 0.69 0.998874
Target:  5'- -gACUGgu-GGCGAGGCGUCCGGc-- -3'
miRNA:   3'- caUGAUaugCUGCUUUGUAGGCUuaa -5'
12625 5' -43.5 NC_003345.1 + 5389 0.7 0.997904
Target:  5'- aUACUcUGCGGCGAAuACAUCCa---- -3'
miRNA:   3'- cAUGAuAUGCUGCUU-UGUAGGcuuaa -5'
12625 5' -43.5 NC_003345.1 + 13517 0.71 0.992767
Target:  5'- aUACUAcgACGGCGAAACGgcugaCCGGAg- -3'
miRNA:   3'- cAUGAUa-UGCUGCUUUGUa----GGCUUaa -5'
12625 5' -43.5 NC_003345.1 + 14069 0.72 0.990179
Target:  5'- cGUGgaGUGCGGCGGAACAgCCGuGUUa -3'
miRNA:   3'- -CAUgaUAUGCUGCUUUGUaGGCuUAA- -5'
12625 5' -43.5 NC_003345.1 + 13548 0.73 0.982879
Target:  5'- -aGCUu--CGAUGAAAUGUCCGAGUUc -3'
miRNA:   3'- caUGAuauGCUGCUUUGUAGGCUUAA- -5'
12625 5' -43.5 NC_003345.1 + 37280 1.07 0.032811
Target:  5'- gGUACUAUACGACGAAACAUCCGAAUUa -3'
miRNA:   3'- -CAUGAUAUGCUGCUUUGUAGGCUUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.