Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12626 | 3' | -55.7 | NC_003345.1 | + | 12641 | 0.66 | 0.810422 |
Target: 5'- cGAAGcguGGAACCUcGCccggcaguuuUCUGCCGAGu -3' miRNA: 3'- cCUUCug-CCUUGGGaCG----------AGACGGCUC- -5' |
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12626 | 3' | -55.7 | NC_003345.1 | + | 12253 | 0.66 | 0.801183 |
Target: 5'- -cAAGAacGAACCCUGCUCcgguggGCCGGa -3' miRNA: 3'- ccUUCUgcCUUGGGACGAGa-----CGGCUc -5' |
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12626 | 3' | -55.7 | NC_003345.1 | + | 58112 | 0.66 | 0.762659 |
Target: 5'- aGGAAGACGuuAUCCgcgacCUCgaaGCCGAGa -3' miRNA: 3'- -CCUUCUGCcuUGGGac---GAGa--CGGCUC- -5' |
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12626 | 3' | -55.7 | NC_003345.1 | + | 14515 | 0.66 | 0.762659 |
Target: 5'- gGGAAG-UGGAcgacgGCCCguaGCUCaggauaGCCGAGa -3' miRNA: 3'- -CCUUCuGCCU-----UGGGa--CGAGa-----CGGCUC- -5' |
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12626 | 3' | -55.7 | NC_003345.1 | + | 4925 | 0.67 | 0.729329 |
Target: 5'- uGGAAGcggcgacgaaagcaACGcGAAUCCUGUUCUGgagauucgaCCGAGg -3' miRNA: 3'- -CCUUC--------------UGC-CUUGGGACGAGAC---------GGCUC- -5' |
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12626 | 3' | -55.7 | NC_003345.1 | + | 13303 | 0.7 | 0.584379 |
Target: 5'- uGGGAGAC-GAACUcggCUGUUCcGCCGGGa -3' miRNA: 3'- -CCUUCUGcCUUGG---GACGAGaCGGCUC- -5' |
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12626 | 3' | -55.7 | NC_003345.1 | + | 15425 | 0.7 | 0.573804 |
Target: 5'- uGGAAGACGGAuACCCcaucuacuccCUCUacGCCGGGc -3' miRNA: 3'- -CCUUCUGCCU-UGGGac--------GAGA--CGGCUC- -5' |
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12626 | 3' | -55.7 | NC_003345.1 | + | 29101 | 0.7 | 0.532028 |
Target: 5'- cGGAuucGCGGAGCCUgaugGCUCUacgaaGCCGAa -3' miRNA: 3'- -CCUuc-UGCCUUGGGa---CGAGA-----CGGCUc -5' |
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12626 | 3' | -55.7 | NC_003345.1 | + | 47225 | 0.71 | 0.501428 |
Target: 5'- uGGAAGAUGaGAGCggCCUGCUgaGCCGu- -3' miRNA: 3'- -CCUUCUGC-CUUG--GGACGAgaCGGCuc -5' |
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12626 | 3' | -55.7 | NC_003345.1 | + | 17653 | 0.74 | 0.354282 |
Target: 5'- uGAAGAUGGAAgCCaacucGCUCUGCUGAa -3' miRNA: 3'- cCUUCUGCCUUgGGa----CGAGACGGCUc -5' |
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12626 | 3' | -55.7 | NC_003345.1 | + | 38562 | 1.11 | 0.001012 |
Target: 5'- uGGAAGACGGAACCCUGCUCUGCCGAGg -3' miRNA: 3'- -CCUUCUGCCUUGGGACGAGACGGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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