miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12626 5' -51.6 NC_003345.1 + 52474 0.66 0.945757
Target:  5'- cACCCCGGA-ACAGCUuggUGGaUUCCa -3'
miRNA:   3'- uUGGGGCUUaUGUUGAugaGCC-GAGG- -5'
12626 5' -51.6 NC_003345.1 + 37589 0.66 0.945757
Target:  5'- gAACCCCGugaaguucAUGCcgGACUgucacgggggACUCGGC-CCg -3'
miRNA:   3'- -UUGGGGCu-------UAUG--UUGA----------UGAGCCGaGG- -5'
12626 5' -51.6 NC_003345.1 + 52073 0.66 0.945757
Target:  5'- aAugCCCGAAgu--GCUACUCcacgaccacGCUCCg -3'
miRNA:   3'- -UugGGGCUUauguUGAUGAGc--------CGAGG- -5'
12626 5' -51.6 NC_003345.1 + 11584 0.66 0.945757
Target:  5'- gAGCCuUCGAGUcCAAUccGCUCGGC-CCa -3'
miRNA:   3'- -UUGG-GGCUUAuGUUGa-UGAGCCGaGG- -5'
12626 5' -51.6 NC_003345.1 + 38748 0.66 0.94528
Target:  5'- gAACUCCGAGUGCGcccauccacgggaACcgAgUCGGC-CCg -3'
miRNA:   3'- -UUGGGGCUUAUGU-------------UGa-UgAGCCGaGG- -5'
12626 5' -51.6 NC_003345.1 + 50450 0.66 0.940862
Target:  5'- aGACCCCGAugGCGAa-GCUCGuaUCg -3'
miRNA:   3'- -UUGGGGCUuaUGUUgaUGAGCcgAGg -5'
12626 5' -51.6 NC_003345.1 + 60338 0.66 0.93569
Target:  5'- cGGCCCUGAuUGCGuucGCUGUUCaGGCgUCCg -3'
miRNA:   3'- -UUGGGGCUuAUGU---UGAUGAG-CCG-AGG- -5'
12626 5' -51.6 NC_003345.1 + 52562 0.66 0.93569
Target:  5'- gAACUCCGAAcGCucCUcaGCgaCGGCUCCc -3'
miRNA:   3'- -UUGGGGCUUaUGuuGA--UGa-GCCGAGG- -5'
12626 5' -51.6 NC_003345.1 + 17957 0.66 0.930239
Target:  5'- cGACCCCGAccuaAUGCcguccacggaaGACcgGCgagaaGGCUCCg -3'
miRNA:   3'- -UUGGGGCU----UAUG-----------UUGa-UGag---CCGAGG- -5'
12626 5' -51.6 NC_003345.1 + 65646 0.68 0.884312
Target:  5'- cGCCCCGGuUACGACgACUCcGCUg- -3'
miRNA:   3'- uUGGGGCUuAUGUUGaUGAGcCGAgg -5'
12626 5' -51.6 NC_003345.1 + 63920 0.68 0.876672
Target:  5'- --aCCCGGAUGugaacgaaaucCGGCUACUCaGCUCg -3'
miRNA:   3'- uugGGGCUUAU-----------GUUGAUGAGcCGAGg -5'
12626 5' -51.6 NC_003345.1 + 5038 0.68 0.868777
Target:  5'- cGGCCCCa-----AGCUaaGCUUGGCUCCu -3'
miRNA:   3'- -UUGGGGcuuaugUUGA--UGAGCCGAGG- -5'
12626 5' -51.6 NC_003345.1 + 17394 0.68 0.860633
Target:  5'- gAACCgaCCGAGUGaauCGACUACUCcGGCUa- -3'
miRNA:   3'- -UUGG--GGCUUAU---GUUGAUGAG-CCGAgg -5'
12626 5' -51.6 NC_003345.1 + 68976 0.68 0.843629
Target:  5'- -uUCCCGAccACGGCaACUaCGGCUUCg -3'
miRNA:   3'- uuGGGGCUuaUGUUGaUGA-GCCGAGG- -5'
12626 5' -51.6 NC_003345.1 + 63042 0.7 0.777545
Target:  5'- cGGCCUCGAcccgGCgAACUACUCcaGCUCCu -3'
miRNA:   3'- -UUGGGGCUua--UG-UUGAUGAGc-CGAGG- -5'
12626 5' -51.6 NC_003345.1 + 50364 0.7 0.767408
Target:  5'- cGCCCCGGcggugguggcgGUGgAGgUGCUggCGGCUCCu -3'
miRNA:   3'- uUGGGGCU-----------UAUgUUgAUGA--GCCGAGG- -5'
12626 5' -51.6 NC_003345.1 + 20045 0.72 0.682214
Target:  5'- cACCCCGGu--CGAUgaguCUCGGCUCa -3'
miRNA:   3'- uUGGGGCUuauGUUGau--GAGCCGAGg -5'
12626 5' -51.6 NC_003345.1 + 38222 0.74 0.550162
Target:  5'- -uCCCCGGAUugGGagaagAUUCGGCUCUa -3'
miRNA:   3'- uuGGGGCUUAugUUga---UGAGCCGAGG- -5'
12626 5' -51.6 NC_003345.1 + 12124 0.75 0.516983
Target:  5'- cGCCCCGucGAUgauguaauaugaaGCGGCUucACUCGGUUCCg -3'
miRNA:   3'- uUGGGGC--UUA-------------UGUUGA--UGAGCCGAGG- -5'
12626 5' -51.6 NC_003345.1 + 61908 0.75 0.46328
Target:  5'- aGACCCCGAG-ACgGACUccgagaguucguaaACUCGGCUCUc -3'
miRNA:   3'- -UUGGGGCUUaUG-UUGA--------------UGAGCCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.