miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12627 5' -55.2 NC_003345.1 + 63911 0.66 0.804244
Target:  5'- uGAACGaaauccggcUACUCaGCUCGGGUUC--GGUg -3'
miRNA:   3'- -CUUGC---------AUGAGaCGAGCCCAAGgcCCG- -5'
12627 5' -55.2 NC_003345.1 + 25844 0.67 0.785325
Target:  5'- --gUGUACcggaUGCUCGaugcGGUugUCCGGGCg -3'
miRNA:   3'- cuuGCAUGag--ACGAGC----CCA--AGGCCCG- -5'
12627 5' -55.2 NC_003345.1 + 12255 0.68 0.704453
Target:  5'- aGAACGaACcCUGCUCcGGUgggCCGGaGCc -3'
miRNA:   3'- -CUUGCaUGaGACGAGcCCAa--GGCC-CG- -5'
12627 5' -55.2 NC_003345.1 + 26093 0.7 0.575563
Target:  5'- uGAACGUucccgugAUUC-GCUCGGGUUCCaucaagccgccGGGUg -3'
miRNA:   3'- -CUUGCA-------UGAGaCGAGCCCAAGG-----------CCCG- -5'
12627 5' -55.2 NC_003345.1 + 62965 0.72 0.479885
Target:  5'- aGGGC-UACUCcacGCUCGGGgccuacgcuggccUCCGGGCg -3'
miRNA:   3'- -CUUGcAUGAGa--CGAGCCCa------------AGGCCCG- -5'
12627 5' -55.2 NC_003345.1 + 15453 0.72 0.464177
Target:  5'- cGAUGUugUauccCUGCUCGGGgucgucguucUCCGGGUa -3'
miRNA:   3'- cUUGCAugA----GACGAGCCCa---------AGGCCCG- -5'
12627 5' -55.2 NC_003345.1 + 38708 1.12 0.001031
Target:  5'- gGAACGUACUCUGCUCGGGUUCCGGGCg -3'
miRNA:   3'- -CUUGCAUGAGACGAGCCCAAGGCCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.