Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12627 | 5' | -55.2 | NC_003345.1 | + | 63911 | 0.66 | 0.804244 |
Target: 5'- uGAACGaaauccggcUACUCaGCUCGGGUUC--GGUg -3' miRNA: 3'- -CUUGC---------AUGAGaCGAGCCCAAGgcCCG- -5' |
|||||||
12627 | 5' | -55.2 | NC_003345.1 | + | 25844 | 0.67 | 0.785325 |
Target: 5'- --gUGUACcggaUGCUCGaugcGGUugUCCGGGCg -3' miRNA: 3'- cuuGCAUGag--ACGAGC----CCA--AGGCCCG- -5' |
|||||||
12627 | 5' | -55.2 | NC_003345.1 | + | 12255 | 0.68 | 0.704453 |
Target: 5'- aGAACGaACcCUGCUCcGGUgggCCGGaGCc -3' miRNA: 3'- -CUUGCaUGaGACGAGcCCAa--GGCC-CG- -5' |
|||||||
12627 | 5' | -55.2 | NC_003345.1 | + | 26093 | 0.7 | 0.575563 |
Target: 5'- uGAACGUucccgugAUUC-GCUCGGGUUCCaucaagccgccGGGUg -3' miRNA: 3'- -CUUGCA-------UGAGaCGAGCCCAAGG-----------CCCG- -5' |
|||||||
12627 | 5' | -55.2 | NC_003345.1 | + | 62965 | 0.72 | 0.479885 |
Target: 5'- aGGGC-UACUCcacGCUCGGGgccuacgcuggccUCCGGGCg -3' miRNA: 3'- -CUUGcAUGAGa--CGAGCCCa------------AGGCCCG- -5' |
|||||||
12627 | 5' | -55.2 | NC_003345.1 | + | 15453 | 0.72 | 0.464177 |
Target: 5'- cGAUGUugUauccCUGCUCGGGgucgucguucUCCGGGUa -3' miRNA: 3'- cUUGCAugA----GACGAGCCCa---------AGGCCCG- -5' |
|||||||
12627 | 5' | -55.2 | NC_003345.1 | + | 38708 | 1.12 | 0.001031 |
Target: 5'- gGAACGUACUCUGCUCGGGUUCCGGGCg -3' miRNA: 3'- -CUUGCAUGAGACGAGCCCAAGGCCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home