miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12628 5' -54.6 NC_003345.1 + 39851 1.1 0.001564
Target:  5'- uCCAACCUCGAUGGGUCGAAGCCCACAa -3'
miRNA:   3'- -GGUUGGAGCUACCCAGCUUCGGGUGU- -5'
12628 5' -54.6 NC_003345.1 + 71611 0.8 0.189249
Target:  5'- cUCAACCUCG--GGGUCGAuuccAGCCCGCu -3'
miRNA:   3'- -GGUUGGAGCuaCCCAGCU----UCGGGUGu -5'
12628 5' -54.6 NC_003345.1 + 46307 0.79 0.220556
Target:  5'- aCCcGCCUCGAUGGuucuguccagcucGUUGAAGUCCACGg -3'
miRNA:   3'- -GGuUGGAGCUACC-------------CAGCUUCGGGUGU- -5'
12628 5' -54.6 NC_003345.1 + 59344 0.76 0.313314
Target:  5'- uUCAACgUUGAUGGGUCGGuugacGGCCCGa- -3'
miRNA:   3'- -GGUUGgAGCUACCCAGCU-----UCGGGUgu -5'
12628 5' -54.6 NC_003345.1 + 71057 0.74 0.413354
Target:  5'- -uGACCUCGAUGGGUucaacgaguaCGggGUgCGCGa -3'
miRNA:   3'- ggUUGGAGCUACCCA----------GCuuCGgGUGU- -5'
12628 5' -54.6 NC_003345.1 + 15339 0.73 0.431844
Target:  5'- cCCAAUcguaCUUGGUGaGGUCGggGCCgACGu -3'
miRNA:   3'- -GGUUG----GAGCUAC-CCAGCuuCGGgUGU- -5'
12628 5' -54.6 NC_003345.1 + 26851 0.72 0.520495
Target:  5'- gCCGACCUCG-UGGG-CGAcauuaaaacGGCUCACc -3'
miRNA:   3'- -GGUUGGAGCuACCCaGCU---------UCGGGUGu -5'
12628 5' -54.6 NC_003345.1 + 70391 0.71 0.541197
Target:  5'- aCCGACCUCGAUGaGaUgGAGGCUgACGa -3'
miRNA:   3'- -GGUUGGAGCUAC-CcAgCUUCGGgUGU- -5'
12628 5' -54.6 NC_003345.1 + 32471 0.71 0.572737
Target:  5'- gCCGACCUCGAUGcGGU--GAGCCacccgaGCGa -3'
miRNA:   3'- -GGUUGGAGCUAC-CCAgcUUCGGg-----UGU- -5'
12628 5' -54.6 NC_003345.1 + 38325 0.71 0.594006
Target:  5'- aCCucgacuACCUCGAaGGccgCGAAGCCUACGg -3'
miRNA:   3'- -GGu-----UGGAGCUaCCca-GCUUCGGGUGU- -5'
12628 5' -54.6 NC_003345.1 + 69722 0.7 0.604691
Target:  5'- aCGGCa-CGAUGGGUCGucggcucgaugAAGCCUACGc -3'
miRNA:   3'- gGUUGgaGCUACCCAGC-----------UUCGGGUGU- -5'
12628 5' -54.6 NC_003345.1 + 70661 0.7 0.604691
Target:  5'- aCC-ACUUCGucGUGGGUCGGAGCgCC-CGu -3'
miRNA:   3'- -GGuUGGAGC--UACCCAGCUUCG-GGuGU- -5'
12628 5' -54.6 NC_003345.1 + 19862 0.7 0.626118
Target:  5'- aCGACCUCGGUGGGgcCGAugcGGUCUuCAa -3'
miRNA:   3'- gGUUGGAGCUACCCa-GCU---UCGGGuGU- -5'
12628 5' -54.6 NC_003345.1 + 44296 0.7 0.647566
Target:  5'- uCCcGCUgUCG-UGGGauuacuUCGAGGCCCACAa -3'
miRNA:   3'- -GGuUGG-AGCuACCC------AGCUUCGGGUGU- -5'
12628 5' -54.6 NC_003345.1 + 32522 0.7 0.647566
Target:  5'- -uGACCgUCGA--GGUCGAugaAGCCCACGu -3'
miRNA:   3'- ggUUGG-AGCUacCCAGCU---UCGGGUGU- -5'
12628 5' -54.6 NC_003345.1 + 4493 0.69 0.658274
Target:  5'- gCCGACCUCGAauUGaaGGUCGGAGauuaccUCCACc -3'
miRNA:   3'- -GGUUGGAGCU--AC--CCAGCUUC------GGGUGu -5'
12628 5' -54.6 NC_003345.1 + 28852 0.69 0.678548
Target:  5'- aCGACCUCGAUuacgaaaucgccgGGGUCGccGGGuacuaCCCGCAg -3'
miRNA:   3'- gGUUGGAGCUA-------------CCCAGC--UUC-----GGGUGU- -5'
12628 5' -54.6 NC_003345.1 + 35838 0.69 0.679612
Target:  5'- cCCAcggaaGCCg----GGGUCGAugaAGCCCGCAu -3'
miRNA:   3'- -GGU-----UGGagcuaCCCAGCU---UCGGGUGU- -5'
12628 5' -54.6 NC_003345.1 + 12263 0.69 0.711271
Target:  5'- cCCuGCUcCGGUGGGcCGGAGCCgAUg -3'
miRNA:   3'- -GGuUGGaGCUACCCaGCUUCGGgUGu -5'
12628 5' -54.6 NC_003345.1 + 14580 0.69 0.711271
Target:  5'- aCGGCgCUCG-UGGGUCGccAGCCgACGu -3'
miRNA:   3'- gGUUG-GAGCuACCCAGCu-UCGGgUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.