miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12630 3' -47.5 NC_003345.1 + 13766 0.66 0.994954
Target:  5'- cGGAUUACGUgGGACUACcaGCUcGCGUcGGa -3'
miRNA:   3'- -CUUGAUGUA-CCUGAUGc-UGA-UGCA-CC- -5'
12630 3' -47.5 NC_003345.1 + 51913 0.66 0.994954
Target:  5'- gGAACUucucucguCGUGGACUGCcggacaGAcCUACGUGu -3'
miRNA:   3'- -CUUGAu-------GUACCUGAUG------CU-GAUGCACc -5'
12630 3' -47.5 NC_003345.1 + 73458 0.67 0.994081
Target:  5'- aAACgucauUAUGGAC-AUGACggGCGUGGg -3'
miRNA:   3'- cUUGau---GUACCUGaUGCUGa-UGCACC- -5'
12630 3' -47.5 NC_003345.1 + 57352 0.67 0.994081
Target:  5'- -cGCUACuucgacccGACgagugGCGAUUACGUGGa -3'
miRNA:   3'- cuUGAUGuac-----CUGa----UGCUGAUGCACC- -5'
12630 3' -47.5 NC_003345.1 + 4207 0.67 0.99266
Target:  5'- cGAC-ACcgGGACaguaaccgacgcCGACUACGUGGa -3'
miRNA:   3'- cUUGaUGuaCCUGau----------GCUGAUGCACC- -5'
12630 3' -47.5 NC_003345.1 + 33857 0.67 0.99266
Target:  5'- gGGACgaggGgAUGGACUACGACgccacccugaaagACG-GGa -3'
miRNA:   3'- -CUUGa---UgUACCUGAUGCUGa------------UGCaCC- -5'
12630 3' -47.5 NC_003345.1 + 21569 0.68 0.98408
Target:  5'- cGACgACGcGGagaGCgaagACGACUACGUGGa -3'
miRNA:   3'- cUUGaUGUaCC---UGa---UGCUGAUGCACC- -5'
12630 3' -47.5 NC_003345.1 + 38476 0.68 0.98408
Target:  5'- cAACUACGUGGACUuCGAggAUaUGGu -3'
miRNA:   3'- cUUGAUGUACCUGAuGCUgaUGcACC- -5'
12630 3' -47.5 NC_003345.1 + 5556 0.69 0.968109
Target:  5'- uGAUgGCAgaGGACgACGACUACGUGa -3'
miRNA:   3'- cUUGaUGUa-CCUGaUGCUGAUGCACc -5'
12630 3' -47.5 NC_003345.1 + 66063 0.7 0.952562
Target:  5'- cGACUACuaccucggaGUGGACUACGaaggcgacccGCUACG-GGa -3'
miRNA:   3'- cUUGAUG---------UACCUGAUGC----------UGAUGCaCC- -5'
12630 3' -47.5 NC_003345.1 + 14063 0.72 0.908018
Target:  5'- aAACUGCGUGGAgUGCGGCggaacagcCGUGu -3'
miRNA:   3'- cUUGAUGUACCUgAUGCUGau------GCACc -5'
12630 3' -47.5 NC_003345.1 + 43391 1.12 0.0073
Target:  5'- aGAACUACAUGGACUACGACUACGUGGu -3'
miRNA:   3'- -CUUGAUGUACCUGAUGCUGAUGCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.