miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12630 5' -50.8 NC_003345.1 + 10666 0.66 0.971191
Target:  5'- gCUCUACGgcaUCGaGUCgGGCAagUCCu -3'
miRNA:   3'- gGGGAUGCa--AGCaUAGgUCGUagAGG- -5'
12630 5' -50.8 NC_003345.1 + 39598 0.66 0.968036
Target:  5'- uCCCCgacucgAUGaUUCGU-UCCAGCAgg-CCg -3'
miRNA:   3'- -GGGGa-----UGC-AAGCAuAGGUCGUagaGG- -5'
12630 5' -50.8 NC_003345.1 + 6818 0.66 0.964645
Target:  5'- uUCCC-GCGUUCGauUCCgauuAGCuccUCUCCg -3'
miRNA:   3'- -GGGGaUGCAAGCauAGG----UCGu--AGAGG- -5'
12630 5' -50.8 NC_003345.1 + 51418 0.66 0.961009
Target:  5'- aCCUgUGgGUUCGUcgCC-GCGUCgauagCCa -3'
miRNA:   3'- -GGGgAUgCAAGCAuaGGuCGUAGa----GG- -5'
12630 5' -50.8 NC_003345.1 + 51005 0.67 0.952978
Target:  5'- gUCCCUGC-UUCGUGaacuUCCGcGCGUUcacgUCCa -3'
miRNA:   3'- -GGGGAUGcAAGCAU----AGGU-CGUAG----AGG- -5'
12630 5' -50.8 NC_003345.1 + 21692 0.67 0.948574
Target:  5'- uUCCU-CGggCGguUCCAGCggCUCCa -3'
miRNA:   3'- gGGGAuGCaaGCauAGGUCGuaGAGG- -5'
12630 5' -50.8 NC_003345.1 + 962 0.67 0.942451
Target:  5'- cCCCCUACaUUcCGUAUgggucaauuccgccCCGGUuccGUCUCCc -3'
miRNA:   3'- -GGGGAUGcAA-GCAUA--------------GGUCG---UAGAGG- -5'
12630 5' -50.8 NC_003345.1 + 65036 0.68 0.92252
Target:  5'- aCCacgaUGCGUUCGUggauAUUCGGCAgaacgUUCCg -3'
miRNA:   3'- gGGg---AUGCAAGCA----UAGGUCGUa----GAGG- -5'
12630 5' -50.8 NC_003345.1 + 65670 0.69 0.903625
Target:  5'- aCCCaCUACGcUCGUGUCagUAGCcgCcCCg -3'
miRNA:   3'- -GGG-GAUGCaAGCAUAG--GUCGuaGaGG- -5'
12630 5' -50.8 NC_003345.1 + 14647 0.69 0.875495
Target:  5'- aCCCgacaguuccggugcgACGUggagCGUGUCguGCuUCUCCg -3'
miRNA:   3'- gGGGa--------------UGCAa---GCAUAGguCGuAGAGG- -5'
12630 5' -50.8 NC_003345.1 + 34078 0.71 0.80555
Target:  5'- aCCaCCacggACGaUgGUuUCCAGCGUCUCCc -3'
miRNA:   3'- -GG-GGa---UGCaAgCAuAGGUCGUAGAGG- -5'
12630 5' -50.8 NC_003345.1 + 43283 0.71 0.790182
Target:  5'- cUCCCUACGUggaCGauauucugaacaccGUUCGGUAUCUCCg -3'
miRNA:   3'- -GGGGAUGCAa--GCa-------------UAGGUCGUAGAGG- -5'
12630 5' -50.8 NC_003345.1 + 31565 0.74 0.639685
Target:  5'- aCCCUGCGUacuuUCGgaaguagugcuggUCGGCGUCUCCu -3'
miRNA:   3'- gGGGAUGCA----AGCaua----------GGUCGUAGAGG- -5'
12630 5' -50.8 NC_003345.1 + 34365 0.75 0.616724
Target:  5'- gCUCC-ACGUUCGUAUCCaaucacaucgAGCGugucuUCUCCg -3'
miRNA:   3'- -GGGGaUGCAAGCAUAGG----------UCGU-----AGAGG- -5'
12630 5' -50.8 NC_003345.1 + 61301 0.75 0.616724
Target:  5'- uCCUCUGCGUUgcUGgaaaUGUCCAGCAcacgCUCCg -3'
miRNA:   3'- -GGGGAUGCAA--GC----AUAGGUCGUa---GAGG- -5'
12630 5' -50.8 NC_003345.1 + 43427 1.14 0.002434
Target:  5'- cCCCCUACGUUCGUAUCCAGCAUCUCCc -3'
miRNA:   3'- -GGGGAUGCAAGCAUAGGUCGUAGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.