miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12633 3' -53 NC_003345.1 + 22293 0.66 0.913209
Target:  5'- cGUCCGAcUUUCggacgUGCuucUCCCACCGcCc -3'
miRNA:   3'- uCAGGCUaAAAG-----GCGu--AGGGUGGCuG- -5'
12633 3' -53 NC_003345.1 + 15267 0.66 0.900088
Target:  5'- --cCCGAggucUUCCGCAaugUCCuUGCCGACc -3'
miRNA:   3'- ucaGGCUaa--AAGGCGU---AGG-GUGGCUG- -5'
12633 3' -53 NC_003345.1 + 18785 0.66 0.900088
Target:  5'- --aCCGGc--UCCcaugcCAUCCCACCGACc -3'
miRNA:   3'- ucaGGCUaaaAGGc----GUAGGGUGGCUG- -5'
12633 3' -53 NC_003345.1 + 21762 0.67 0.870717
Target:  5'- --cCCGAgggugucCCGCAggCCGCCGACc -3'
miRNA:   3'- ucaGGCUaaaa---GGCGUagGGUGGCUG- -5'
12633 3' -53 NC_003345.1 + 17900 0.67 0.837467
Target:  5'- ---aCGAcgUUCCGguUCUCAUCGACg -3'
miRNA:   3'- ucagGCUaaAAGGCguAGGGUGGCUG- -5'
12633 3' -53 NC_003345.1 + 46356 0.68 0.799877
Target:  5'- cAGUCCGAc-UUCCcCAUCCCcgagauuACCGAg -3'
miRNA:   3'- -UCAGGCUaaAAGGcGUAGGG-------UGGCUg -5'
12633 3' -53 NC_003345.1 + 75488 0.68 0.790242
Target:  5'- cGUCUGAacggUCGCAUCCCGaacaagagcguauCCGGCg -3'
miRNA:   3'- uCAGGCUaaaaGGCGUAGGGU-------------GGCUG- -5'
12633 3' -53 NC_003345.1 + 11524 0.69 0.75122
Target:  5'- cGUCCGAUg--CCGU-UCCCcgaggaacACCGGCu -3'
miRNA:   3'- uCAGGCUAaaaGGCGuAGGG--------UGGCUG- -5'
12633 3' -53 NC_003345.1 + 53476 0.69 0.75122
Target:  5'- gAGUCUcaaGAUUggCCGCAccgaCCCGCCGGa -3'
miRNA:   3'- -UCAGG---CUAAaaGGCGUa---GGGUGGCUg -5'
12633 3' -53 NC_003345.1 + 2672 0.74 0.494735
Target:  5'- cGUUCGAU--UCCGcCGUCUCAUCGACu -3'
miRNA:   3'- uCAGGCUAaaAGGC-GUAGGGUGGCUG- -5'
12633 3' -53 NC_003345.1 + 46217 1.11 0.001977
Target:  5'- gAGUCCGAUUUUCCGCAUCCCACCGACg -3'
miRNA:   3'- -UCAGGCUAAAAGGCGUAGGGUGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.