miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12634 5' -54.5 NC_003345.1 + 55446 0.66 0.844596
Target:  5'- -aCCGGAgggGGugGCGGCGGuucaGAGCg- -3'
miRNA:   3'- agGGUUUa--CUugCGCCGCCc---UUCGag -5'
12634 5' -54.5 NC_003345.1 + 58220 0.66 0.844596
Target:  5'- -gCCGGAUGaAGCcCGGUGGGuGGUUCc -3'
miRNA:   3'- agGGUUUAC-UUGcGCCGCCCuUCGAG- -5'
12634 5' -54.5 NC_003345.1 + 28508 0.66 0.844596
Target:  5'- gUUCGAG-GAuaaGCGGUGGGAguuGGCUCu -3'
miRNA:   3'- aGGGUUUaCUug-CGCCGCCCU---UCGAG- -5'
12634 5' -54.5 NC_003345.1 + 45456 0.66 0.808744
Target:  5'- -gCgAGGUGAGCGagaaGGCGGcGGuucAGCUCg -3'
miRNA:   3'- agGgUUUACUUGCg---CCGCC-CU---UCGAG- -5'
12634 5' -54.5 NC_003345.1 + 68398 0.66 0.808744
Target:  5'- gCCCucgAAGUGGACgGCGGCGaGcGGGUUCg -3'
miRNA:   3'- aGGG---UUUACUUG-CGCCGC-CcUUCGAG- -5'
12634 5' -54.5 NC_003345.1 + 19297 0.66 0.808744
Target:  5'- gCCCAAAUcgaGAAgGCGcGUGGuGAGGCg- -3'
miRNA:   3'- aGGGUUUA---CUUgCGC-CGCC-CUUCGag -5'
12634 5' -54.5 NC_003345.1 + 58336 0.67 0.779926
Target:  5'- cCCCgAAGUGAAcCGCGuCGGGGAGgUa -3'
miRNA:   3'- aGGG-UUUACUU-GCGCcGCCCUUCgAg -5'
12634 5' -54.5 NC_003345.1 + 49154 0.67 0.770006
Target:  5'- cCCCGGAgcAACGUGGUcGGGAGCg- -3'
miRNA:   3'- aGGGUUUacUUGCGCCGcCCUUCGag -5'
12634 5' -54.5 NC_003345.1 + 11176 0.67 0.770006
Target:  5'- aCCCAcggcgagauAGUGAACcCGGCgaacaGGGAGGCg- -3'
miRNA:   3'- aGGGU---------UUACUUGcGCCG-----CCCUUCGag -5'
12634 5' -54.5 NC_003345.1 + 13962 0.69 0.665003
Target:  5'- aUCCCGAGUGGACuucauucUGGUGGuGAAGCcCg -3'
miRNA:   3'- -AGGGUUUACUUGc------GCCGCC-CUUCGaG- -5'
12634 5' -54.5 NC_003345.1 + 77626 0.69 0.654161
Target:  5'- gCCCGuAUGGACG-GGCaGGggGCg- -3'
miRNA:   3'- aGGGUuUACUUGCgCCGcCCuuCGag -5'
12634 5' -54.5 NC_003345.1 + 339 0.69 0.654161
Target:  5'- gCCCGuAUGGACG-GGCaGGggGCg- -3'
miRNA:   3'- aGGGUuUACUUGCgCCGcCCuuCGag -5'
12634 5' -54.5 NC_003345.1 + 51122 0.69 0.6433
Target:  5'- --gCAGAUGGACGUGaacGCGcGGAAGUUCa -3'
miRNA:   3'- aggGUUUACUUGCGC---CGC-CCUUCGAG- -5'
12634 5' -54.5 NC_003345.1 + 75503 0.7 0.589033
Target:  5'- aUCCCGAAcaaGAGCGUauccGGCGGaGAAGUUUu -3'
miRNA:   3'- -AGGGUUUa--CUUGCG----CCGCC-CUUCGAG- -5'
12634 5' -54.5 NC_003345.1 + 58825 0.7 0.578251
Target:  5'- uUCCgCAAGcgucUGAACGCGGCGGaGAuuuucCUCa -3'
miRNA:   3'- -AGG-GUUU----ACUUGCGCCGCC-CUuc---GAG- -5'
12634 5' -54.5 NC_003345.1 + 50362 0.71 0.524098
Target:  5'- cCCCGgcGGUGGugGCGGUGGaGGugcuggcGGCUCc -3'
miRNA:   3'- aGGGU--UUACUugCGCCGCC-CU-------UCGAG- -5'
12634 5' -54.5 NC_003345.1 + 14962 0.71 0.514731
Target:  5'- gCCCGGc--AGCGCGGCGGGcuucGCUCc -3'
miRNA:   3'- aGGGUUuacUUGCGCCGCCCuu--CGAG- -5'
12634 5' -54.5 NC_003345.1 + 50119 0.72 0.494168
Target:  5'- cUCCGgcGGUGGAgGUGGCGGuGGAGCUa -3'
miRNA:   3'- aGGGU--UUACUUgCGCCGCC-CUUCGAg -5'
12634 5' -54.5 NC_003345.1 + 24327 0.72 0.484027
Target:  5'- uUCCCuuGUG-GC-CGGacaGGGAAGCUCg -3'
miRNA:   3'- -AGGGuuUACuUGcGCCg--CCCUUCGAG- -5'
12634 5' -54.5 NC_003345.1 + 46646 1.09 0.001639
Target:  5'- gUCCCAAAUGAACGCGGCGGGAAGCUCc -3'
miRNA:   3'- -AGGGUUUACUUGCGCCGCCCUUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.