miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12636 3' -50.1 NC_003345.1 + 64643 0.67 0.952562
Target:  5'- -----cGGCCUGUUCc--GGUUCAUCg -3'
miRNA:   3'- ugcucaCCGGACAAGacuUCAAGUAG- -5'
12636 3' -50.1 NC_003345.1 + 53626 0.67 0.938014
Target:  5'- uCGGGUGcGUCUGUccguUCgGAAGUUCAg- -3'
miRNA:   3'- uGCUCAC-CGGACA----AGaCUUCAAGUag -5'
12636 3' -50.1 NC_003345.1 + 20162 0.67 0.932593
Target:  5'- gAUGAGUGGUacggucGUUCcGAAGUUCAa- -3'
miRNA:   3'- -UGCUCACCGga----CAAGaCUUCAAGUag -5'
12636 3' -50.1 NC_003345.1 + 48503 1.11 0.003402
Target:  5'- cACGAGUGGCCUGUUCUGAAGUUCAUCa -3'
miRNA:   3'- -UGCUCACCGGACAAGACUUCAAGUAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.