miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12637 5' -53.8 NC_003345.1 + 32804 0.66 0.88539
Target:  5'- cGUCGgg-CCGCCGuaGCCGgugUAGGu- -3'
miRNA:   3'- -CGGCaaaGGUGGCggCGGCa--AUCUug -5'
12637 5' -53.8 NC_003345.1 + 67880 0.66 0.873392
Target:  5'- cGUCGUgccauuauagagugaUUCCGCCGCuggagucuuccuCGUCGUcAGAGCc -3'
miRNA:   3'- -CGGCA---------------AAGGUGGCG------------GCGGCAaUCUUG- -5'
12637 5' -53.8 NC_003345.1 + 1580 0.66 0.870295
Target:  5'- -aCGUUUCCAuaGCUGUCGcuaAGGACa -3'
miRNA:   3'- cgGCAAAGGUggCGGCGGCaa-UCUUG- -5'
12637 5' -53.8 NC_003345.1 + 55648 0.66 0.870295
Target:  5'- gGCCGUgaauacUUCCgugACCGuauCCGCCGUcAGuAGCa -3'
miRNA:   3'- -CGGCA------AAGG---UGGC---GGCGGCAaUC-UUG- -5'
12637 5' -53.8 NC_003345.1 + 375 0.67 0.845879
Target:  5'- cGCCGUUUUCACgGCC-Ca-UUAGAAUc -3'
miRNA:   3'- -CGGCAAAGGUGgCGGcGgcAAUCUUG- -5'
12637 5' -53.8 NC_003345.1 + 77662 0.67 0.845879
Target:  5'- cGCCGUUUUCACgGCC-Ca-UUAGAAUc -3'
miRNA:   3'- -CGGCAAAGGUGgCGGcGgcAAUCUUG- -5'
12637 5' -53.8 NC_003345.1 + 23241 0.67 0.845879
Target:  5'- cGCCGUcUCCGCU-CgGUCGgggAGAGCg -3'
miRNA:   3'- -CGGCAaAGGUGGcGgCGGCaa-UCUUG- -5'
12637 5' -53.8 NC_003345.1 + 50251 0.67 0.828506
Target:  5'- aGCCGccagcaccUCCACCGCCaccaCCGccGGGGCg -3'
miRNA:   3'- -CGGCaa------AGGUGGCGGc---GGCaaUCUUG- -5'
12637 5' -53.8 NC_003345.1 + 40079 0.68 0.781749
Target:  5'- cGUCGgagguagUCuCGCuCGUCGCCGUUGGAc- -3'
miRNA:   3'- -CGGCaa-----AG-GUG-GCGGCGGCAAUCUug -5'
12637 5' -53.8 NC_003345.1 + 37196 0.68 0.771906
Target:  5'- gGUCGgUUCCGCU-CCGaCUGUUGGAGCc -3'
miRNA:   3'- -CGGCaAAGGUGGcGGC-GGCAAUCUUG- -5'
12637 5' -53.8 NC_003345.1 + 73415 0.68 0.761925
Target:  5'- cGCUcag-CCACCGCCGCCGg------ -3'
miRNA:   3'- -CGGcaaaGGUGGCGGCGGCaaucuug -5'
12637 5' -53.8 NC_003345.1 + 33069 0.68 0.751814
Target:  5'- cGCCGgg-CCgACCGCCaacccGCCGgaGGAAa -3'
miRNA:   3'- -CGGCaaaGG-UGGCGG-----CGGCaaUCUUg -5'
12637 5' -53.8 NC_003345.1 + 39300 0.68 0.751814
Target:  5'- aGUCGUguaCCAcCCGUCGCCGUuguauucguaUAGAAa -3'
miRNA:   3'- -CGGCAaa-GGU-GGCGGCGGCA----------AUCUUg -5'
12637 5' -53.8 NC_003345.1 + 31003 0.69 0.731251
Target:  5'- uUCGaccUCuCGCCGCCGCCGguuUAGAAg -3'
miRNA:   3'- cGGCaa-AG-GUGGCGGCGGCa--AUCUUg -5'
12637 5' -53.8 NC_003345.1 + 69462 0.69 0.728131
Target:  5'- cGCCGagggagcagucugcgUCaCGCCGCCGCCc--GGAGCg -3'
miRNA:   3'- -CGGCaa-------------AG-GUGGCGGCGGcaaUCUUG- -5'
12637 5' -53.8 NC_003345.1 + 67246 0.69 0.710304
Target:  5'- aCCGgagggCCACCGUcagcguauuuCGCCGcUGGAACa -3'
miRNA:   3'- cGGCaaa--GGUGGCG----------GCGGCaAUCUUG- -5'
12637 5' -53.8 NC_003345.1 + 9094 0.7 0.678355
Target:  5'- cGCCGUUUCCACCuCC-CCGauuGAAg -3'
miRNA:   3'- -CGGCAAAGGUGGcGGcGGCaauCUUg -5'
12637 5' -53.8 NC_003345.1 + 72314 0.7 0.667606
Target:  5'- cGUCGgggCCACCGCCGcCCGgcGGcuccAGCg -3'
miRNA:   3'- -CGGCaaaGGUGGCGGC-GGCaaUC----UUG- -5'
12637 5' -53.8 NC_003345.1 + 21820 0.7 0.646023
Target:  5'- cGCCGgagucgCCACCGagcgaGCCGcUGGAGCc -3'
miRNA:   3'- -CGGCaaa---GGUGGCgg---CGGCaAUCUUG- -5'
12637 5' -53.8 NC_003345.1 + 55427 0.71 0.635208
Target:  5'- cCCGUUacccCCACCGCCGuuaccuCCGagAGAACg -3'
miRNA:   3'- cGGCAAa---GGUGGCGGC------GGCaaUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.