miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12638 3' -49.4 NC_003345.1 + 70151 0.66 0.982697
Target:  5'- uCgGUCaGCUCAGAaUCGaaauccuGAACCUCCGa -3'
miRNA:   3'- -GgUAGaCGAGUUUgAGU-------CUUGGAGGU- -5'
12638 3' -49.4 NC_003345.1 + 45268 0.66 0.980685
Target:  5'- uCCGUCUuCUCAAGCUCAccgucaccACaCUCCGg -3'
miRNA:   3'- -GGUAGAcGAGUUUGAGUcu------UG-GAGGU- -5'
12638 3' -49.4 NC_003345.1 + 63993 0.66 0.980685
Target:  5'- cCCGUCguugaaUCAAACUUAGAACCggCGu -3'
miRNA:   3'- -GGUAGacg---AGUUUGAGUCUUGGagGU- -5'
12638 3' -49.4 NC_003345.1 + 40393 0.67 0.972711
Target:  5'- cCCGUagUUGC-CGAGCcacgUCAGAACUUCCu -3'
miRNA:   3'- -GGUA--GACGaGUUUG----AGUCUUGGAGGu -5'
12638 3' -49.4 NC_003345.1 + 65379 0.67 0.972711
Target:  5'- uCCGUUg--UCAGACUCucaGGAAUCUCCGa -3'
miRNA:   3'- -GGUAGacgAGUUUGAG---UCUUGGAGGU- -5'
12638 3' -49.4 NC_003345.1 + 54147 0.67 0.966219
Target:  5'- -gGUC-GCUCcGAgUCuGAACCUCCGu -3'
miRNA:   3'- ggUAGaCGAGuUUgAGuCUUGGAGGU- -5'
12638 3' -49.4 NC_003345.1 + 17819 0.67 0.966219
Target:  5'- aCAUCaGCUCGuGGCaCGGAGCCUUCu -3'
miRNA:   3'- gGUAGaCGAGU-UUGaGUCUUGGAGGu -5'
12638 3' -49.4 NC_003345.1 + 51458 0.67 0.962595
Target:  5'- cCCGUC-GUUCGAuuacCUCuaccggcgcuGGAGCCUCCGg -3'
miRNA:   3'- -GGUAGaCGAGUUu---GAG----------UCUUGGAGGU- -5'
12638 3' -49.4 NC_003345.1 + 13077 0.67 0.958708
Target:  5'- uCCAUCggGUUCAuGCUCu---CCUCCGa -3'
miRNA:   3'- -GGUAGa-CGAGUuUGAGucuuGGAGGU- -5'
12638 3' -49.4 NC_003345.1 + 66990 0.67 0.958708
Target:  5'- aCCAgauggUGUUCGgggguGGCuaUCAGAACCUCCAc -3'
miRNA:   3'- -GGUag---ACGAGU-----UUG--AGUCUUGGAGGU- -5'
12638 3' -49.4 NC_003345.1 + 27163 0.68 0.949666
Target:  5'- uCCAUCUcGCUCAgguuGACgacgacggcaaccUCAcGAACUUCCAa -3'
miRNA:   3'- -GGUAGA-CGAGU----UUG-------------AGU-CUUGGAGGU- -5'
12638 3' -49.4 NC_003345.1 + 2904 0.69 0.917598
Target:  5'- gCGUUgGCUCAucucACUCacaucgGGAACCUCCGg -3'
miRNA:   3'- gGUAGaCGAGUu---UGAG------UCUUGGAGGU- -5'
12638 3' -49.4 NC_003345.1 + 54248 0.71 0.858434
Target:  5'- aCGgagGUUCAGACUCGGAGcgacCCUCCGa -3'
miRNA:   3'- gGUagaCGAGUUUGAGUCUU----GGAGGU- -5'
12638 3' -49.4 NC_003345.1 + 15271 0.71 0.832002
Target:  5'- cCCAUCggagCAAacGCUCGGGACUUCCGg -3'
miRNA:   3'- -GGUAGacgaGUU--UGAGUCUUGGAGGU- -5'
12638 3' -49.4 NC_003345.1 + 51037 1.12 0.003957
Target:  5'- uCCAUCUGCUCAAACUCAGAACCUCCAg -3'
miRNA:   3'- -GGUAGACGAGUUUGAGUCUUGGAGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.