miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12639 5' -52.3 NC_003345.1 + 16752 0.66 0.946129
Target:  5'- gCuuGUCUCGUUgcuUUUgGCGUCugugcuguugucgcuAACGACg -3'
miRNA:   3'- -GggCAGAGCAG---AAGgUGCAG---------------UUGCUG- -5'
12639 5' -52.3 NC_003345.1 + 18833 0.66 0.939417
Target:  5'- aCCCGUUgCGUCaccCCAC-UCggUGACa -3'
miRNA:   3'- -GGGCAGaGCAGaa-GGUGcAGuuGCUG- -5'
12639 5' -52.3 NC_003345.1 + 21757 0.66 0.939417
Target:  5'- aCCGUCgUCGUCg-CCGCccgaGUUGGCGAUa -3'
miRNA:   3'- gGGCAG-AGCAGaaGGUG----CAGUUGCUG- -5'
12639 5' -52.3 NC_003345.1 + 33342 0.66 0.939417
Target:  5'- gUCCGUCgUCGUgUuccUCCACGUagAGCGGg -3'
miRNA:   3'- -GGGCAG-AGCAgA---AGGUGCAg-UUGCUg -5'
12639 5' -52.3 NC_003345.1 + 28249 0.66 0.939417
Target:  5'- -aCGUCUCGaagucCCGCGUCAA-GACg -3'
miRNA:   3'- ggGCAGAGCagaa-GGUGCAGUUgCUG- -5'
12639 5' -52.3 NC_003345.1 + 53117 0.66 0.928383
Target:  5'- gUCGUCUCGccgucaaUCUccucaauaucUCCAUcgagGUCAACGACu -3'
miRNA:   3'- gGGCAGAGC-------AGA----------AGGUG----CAGUUGCUG- -5'
12639 5' -52.3 NC_003345.1 + 70023 0.67 0.904794
Target:  5'- cCUCGUCuUCGUCUUCCuccuccuCGUCuucauccgccucAGCGAa -3'
miRNA:   3'- -GGGCAG-AGCAGAAGGu------GCAG------------UUGCUg -5'
12639 5' -52.3 NC_003345.1 + 37771 0.67 0.903476
Target:  5'- cCCCGaC-CGUCUUCgGaaucagcggucaGUCAGCGGCa -3'
miRNA:   3'- -GGGCaGaGCAGAAGgUg-----------CAGUUGCUG- -5'
12639 5' -52.3 NC_003345.1 + 21550 0.67 0.898103
Target:  5'- gUCGUCcuugUCGUCcaCCACGUCGugacCGGCg -3'
miRNA:   3'- gGGCAG----AGCAGaaGGUGCAGUu---GCUG- -5'
12639 5' -52.3 NC_003345.1 + 69590 0.68 0.891157
Target:  5'- aCCCGUCUa-UCUcgcUCCGgG-CGGCGGCg -3'
miRNA:   3'- -GGGCAGAgcAGA---AGGUgCaGUUGCUG- -5'
12639 5' -52.3 NC_003345.1 + 28685 0.68 0.883958
Target:  5'- -gCGcCUCGgCUUCUAUGUCAAcCGGCu -3'
miRNA:   3'- ggGCaGAGCaGAAGGUGCAGUU-GCUG- -5'
12639 5' -52.3 NC_003345.1 + 36280 0.68 0.868823
Target:  5'- uCCCGacgagcUUCGUCUUCCACcUCGuuGCGAa -3'
miRNA:   3'- -GGGCa-----GAGCAGAAGGUGcAGU--UGCUg -5'
12639 5' -52.3 NC_003345.1 + 68503 0.68 0.868823
Target:  5'- aCCCG-CUCGcCgccgUCCACuUCGAgGGCa -3'
miRNA:   3'- -GGGCaGAGCaGa---AGGUGcAGUUgCUG- -5'
12639 5' -52.3 NC_003345.1 + 70952 0.69 0.844369
Target:  5'- cCCCGUaCUCGUUgaacCCAUcgagGUCAACGGa -3'
miRNA:   3'- -GGGCA-GAGCAGaa--GGUG----CAGUUGCUg -5'
12639 5' -52.3 NC_003345.1 + 60120 0.69 0.824309
Target:  5'- gCCGUCUuugaCGUgCUUCCcguucagcucgggaAgGUCAACGACg -3'
miRNA:   3'- gGGCAGA----GCA-GAAGG--------------UgCAGUUGCUG- -5'
12639 5' -52.3 NC_003345.1 + 69755 0.7 0.76046
Target:  5'- aCCG-CUCGUaCUggucggcaagccUCCACGaCAACGGCa -3'
miRNA:   3'- gGGCaGAGCA-GA------------AGGUGCaGUUGCUG- -5'
12639 5' -52.3 NC_003345.1 + 74890 0.71 0.733986
Target:  5'- aCCGUaUCGccgcaaauuucgauuUUUUCCACGUCAGCGGg -3'
miRNA:   3'- gGGCAgAGC---------------AGAAGGUGCAGUUGCUg -5'
12639 5' -52.3 NC_003345.1 + 47249 0.78 0.374566
Target:  5'- gCCGUCUCGaaaaugUCUUCCAUGUCGucGCGGg -3'
miRNA:   3'- gGGCAGAGC------AGAAGGUGCAGU--UGCUg -5'
12639 5' -52.3 NC_003345.1 + 51492 1.13 0.002199
Target:  5'- gCCCGUCUCGUCUUCCACGUCAACGACg -3'
miRNA:   3'- -GGGCAGAGCAGAAGGUGCAGUUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.