miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1264 3' -55.9 NC_001317.1 + 3441 0.69 0.340382
Target:  5'- cGUGCCAgUCGUucaauCUGCCGCC-CGAg- -3'
miRNA:   3'- -CGCGGUaAGUAu----GGCGGCGGcGCUau -5'
1264 3' -55.9 NC_001317.1 + 15592 0.69 0.340382
Target:  5'- cGCGCCGggggcUgAUGCCguGCCGCUGCGu-- -3'
miRNA:   3'- -CGCGGUa----AgUAUGG--CGGCGGCGCuau -5'
1264 3' -55.9 NC_001317.1 + 20605 0.69 0.343826
Target:  5'- aGUGCCA-UCAUGCCGCacaugcgcgaacaaGCCGCu--- -3'
miRNA:   3'- -CGCGGUaAGUAUGGCGg-------------CGGCGcuau -5'
1264 3' -55.9 NC_001317.1 + 17545 0.69 0.349041
Target:  5'- cGCGCCAUUCucaGCCGCCuGCaGCu--- -3'
miRNA:   3'- -CGCGGUAAGua-UGGCGG-CGgCGcuau -5'
1264 3' -55.9 NC_001317.1 + 6969 0.67 0.443942
Target:  5'- uGCGCCAg----ACUGCCGCCGg---- -3'
miRNA:   3'- -CGCGGUaaguaUGGCGGCGGCgcuau -5'
1264 3' -55.9 NC_001317.1 + 15529 1.09 0.000366
Target:  5'- aGCGCCAUUCAUACCGCCGCCGCGAUAg -3'
miRNA:   3'- -CGCGGUAAGUAUGGCGGCGGCGCUAU- -5'
1264 3' -55.9 NC_001317.1 + 25357 0.73 0.167103
Target:  5'- uGUGCCAUUUAUaACCuuuaaaucgcccugGCuCGCCGCGAUAc -3'
miRNA:   3'- -CGCGGUAAGUA-UGG--------------CG-GCGGCGCUAU- -5'
1264 3' -55.9 NC_001317.1 + 17810 0.73 0.183491
Target:  5'- gGCGgcuuCCAUcaGUACCGCCGCCGcCGAg- -3'
miRNA:   3'- -CGC----GGUAagUAUGGCGGCGGC-GCUau -5'
1264 3' -55.9 NC_001317.1 + 2492 0.72 0.205246
Target:  5'- aGCGCCGggugcgUCGUGCucgCGCCGCCgGUGGUu -3'
miRNA:   3'- -CGCGGUa-----AGUAUG---GCGGCGG-CGCUAu -5'
1264 3' -55.9 NC_001317.1 + 2302 0.71 0.24204
Target:  5'- uGCGCuCAUUC-UACCcgGCCGCaCGCGGc- -3'
miRNA:   3'- -CGCG-GUAAGuAUGG--CGGCG-GCGCUau -5'
1264 3' -55.9 NC_001317.1 + 24269 0.67 0.413943
Target:  5'- aCGCgAagUAUugCGCCGUCGCGGg- -3'
miRNA:   3'- cGCGgUaaGUAugGCGGCGGCGCUau -5'
1264 3' -55.9 NC_001317.1 + 26854 0.66 0.464606
Target:  5'- -aGCCGcgaaCAUACgGUCGCgGCGAUGc -3'
miRNA:   3'- cgCGGUaa--GUAUGgCGGCGgCGCUAU- -5'
1264 3' -55.9 NC_001317.1 + 3564 0.66 0.48576
Target:  5'- cGCGCCugAUUCAgcucAUCGCCaaGCCGCa--- -3'
miRNA:   3'- -CGCGG--UAAGUa---UGGCGG--CGGCGcuau -5'
1264 3' -55.9 NC_001317.1 + 9541 0.66 0.517215
Target:  5'- cGCGCCAUgcgcugCAccuUGCCGguaaacuccaccaCCGCCGCa--- -3'
miRNA:   3'- -CGCGGUAa-----GU---AUGGC-------------GGCGGCGcuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.