miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12641 5' -52.7 NC_003345.1 + 20140 0.73 0.527243
Target:  5'- cCCGAUACCaucGGGGAGGuCGAACUCc-- -3'
miRNA:   3'- aGGCUGUGG---CUCUUCC-GCUUGAGuua -5'
12641 5' -52.7 NC_003345.1 + 20869 0.74 0.465391
Target:  5'- cCCGACGCCGAGGGaa-GGACUCGAa -3'
miRNA:   3'- aGGCUGUGGCUCUUccgCUUGAGUUa -5'
12641 5' -52.7 NC_003345.1 + 52500 0.69 0.784466
Target:  5'- gCUGACGCCGAGAcgguucAGGgGAACa---- -3'
miRNA:   3'- aGGCUGUGGCUCU------UCCgCUUGaguua -5'
12641 5' -52.7 NC_003345.1 + 76325 0.68 0.794268
Target:  5'- cUCCGAaaGCCGAGAAGG-GGAUUCc-- -3'
miRNA:   3'- -AGGCUg-UGGCUCUUCCgCUUGAGuua -5'
12641 5' -52.7 NC_003345.1 + 68274 0.68 0.831684
Target:  5'- -aCGACGCUGAGGuggauugguauGGCGAcccgGCUCAGg -3'
miRNA:   3'- agGCUGUGGCUCUu----------CCGCU----UGAGUUa -5'
12641 5' -52.7 NC_003345.1 + 45452 0.67 0.864953
Target:  5'- --gGugAgCGAGAAGGCGGcgguucaGCUCGGUa -3'
miRNA:   3'- aggCugUgGCUCUUCCGCU-------UGAGUUA- -5'
12641 5' -52.7 NC_003345.1 + 52740 0.67 0.865759
Target:  5'- cCCGAC-CgGAGAGGGCGGgaaaaaggaggACUUAu- -3'
miRNA:   3'- aGGCUGuGgCUCUUCCGCU-----------UGAGUua -5'
12641 5' -52.7 NC_003345.1 + 64395 0.67 0.873691
Target:  5'- cCCGGC-CCGAacGggGGCGAcaacGCUgAAUc -3'
miRNA:   3'- aGGCUGuGGCU--CuuCCGCU----UGAgUUA- -5'
12641 5' -52.7 NC_003345.1 + 61256 0.66 0.895262
Target:  5'- aUUCGAgGCCGAGAAGguacgcgaaaaccGCGAGCagGAg -3'
miRNA:   3'- -AGGCUgUGGCUCUUC-------------CGCUUGagUUa -5'
12641 5' -52.7 NC_003345.1 + 72891 0.66 0.902868
Target:  5'- aCUGACccucCCGAcGAGGGCGAGCg---- -3'
miRNA:   3'- aGGCUGu---GGCU-CUUCCGCUUGaguua -5'
12641 5' -52.7 NC_003345.1 + 66354 0.66 0.915859
Target:  5'- cUCCGACGaCGcGAAGGCGuacCUCGc- -3'
miRNA:   3'- -AGGCUGUgGCuCUUCCGCuu-GAGUua -5'
12641 5' -52.7 NC_003345.1 + 58731 0.78 0.277133
Target:  5'- -aCGACACCGAGAAcgauauuguGGCGAGCUUAu- -3'
miRNA:   3'- agGCUGUGGCUCUU---------CCGCUUGAGUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.