Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12641 | 5' | -52.7 | NC_003345.1 | + | 23792 | 0.68 | 0.794268 |
Target: 5'- -aCGAgcuuCACCGAGAGGuGCGAagaaugaccACUCAAa -3' miRNA: 3'- agGCU----GUGGCUCUUC-CGCU---------UGAGUUa -5' |
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12641 | 5' | -52.7 | NC_003345.1 | + | 52500 | 0.69 | 0.784466 |
Target: 5'- gCUGACGCCGAGAcgguucAGGgGAACa---- -3' miRNA: 3'- aGGCUGUGGCUCU------UCCgCUUGaguua -5' |
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12641 | 5' | -52.7 | NC_003345.1 | + | 30687 | 0.7 | 0.712063 |
Target: 5'- gUCCGACucggaACCGAGAGGGaacgcgguCGGGCUUGAc -3' miRNA: 3'- -AGGCUG-----UGGCUCUUCC--------GCUUGAGUUa -5' |
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12641 | 5' | -52.7 | NC_003345.1 | + | 51301 | 0.7 | 0.698077 |
Target: 5'- cUCGAC-CCGAGAuacguuaacgagacAGGCG-ACUCGAUg -3' miRNA: 3'- aGGCUGuGGCUCU--------------UCCGCuUGAGUUA- -5' |
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12641 | 5' | -52.7 | NC_003345.1 | + | 28339 | 0.71 | 0.668711 |
Target: 5'- aCC-ACACCGAGAAGGgGAG-UCAGa -3' miRNA: 3'- aGGcUGUGGCUCUUCCgCUUgAGUUa -5' |
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12641 | 5' | -52.7 | NC_003345.1 | + | 19445 | 0.72 | 0.613823 |
Target: 5'- cUCCGACGCuCGuGAAGGagaCGAACUCc-- -3' miRNA: 3'- -AGGCUGUG-GCuCUUCC---GCUUGAGuua -5' |
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12641 | 5' | -52.7 | NC_003345.1 | + | 71019 | 0.72 | 0.602854 |
Target: 5'- aCCG-CGCCGAGGAuGGUGAGCUgGu- -3' miRNA: 3'- aGGCuGUGGCUCUU-CCGCUUGAgUua -5' |
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12641 | 5' | -52.7 | NC_003345.1 | + | 38391 | 0.72 | 0.59191 |
Target: 5'- gUUCGAguCCGGGGAGuaGGACUCAAUc -3' miRNA: 3'- -AGGCUguGGCUCUUCcgCUUGAGUUA- -5' |
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12641 | 5' | -52.7 | NC_003345.1 | + | 20140 | 0.73 | 0.527243 |
Target: 5'- cCCGAUACCaucGGGGAGGuCGAACUCc-- -3' miRNA: 3'- aGGCUGUGG---CUCUUCC-GCUUGAGuua -5' |
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12641 | 5' | -52.7 | NC_003345.1 | + | 20869 | 0.74 | 0.465391 |
Target: 5'- cCCGACGCCGAGGGaa-GGACUCGAa -3' miRNA: 3'- aGGCUGUGGCUCUUccgCUUGAGUUa -5' |
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12641 | 5' | -52.7 | NC_003345.1 | + | 58731 | 0.78 | 0.277133 |
Target: 5'- -aCGACACCGAGAAcgauauuguGGCGAGCUUAu- -3' miRNA: 3'- agGCUGUGGCUCUU---------CCGCUUGAGUua -5' |
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12641 | 5' | -52.7 | NC_003345.1 | + | 51953 | 1.07 | 0.003557 |
Target: 5'- uUCCGACACCGAGAAGGCGAACUCAAUa -3' miRNA: 3'- -AGGCUGUGGCUCUUCCGCUUGAGUUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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