miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12643 3' -54.9 NC_003345.1 + 32288 0.66 0.866766
Target:  5'- -aUUGAGAUGGAcGCGCCGc---CCCg -3'
miRNA:   3'- agGGCUCUGCCUuUGCGGCaaguGGG- -5'
12643 3' -54.9 NC_003345.1 + 891 0.66 0.866766
Target:  5'- aCCgGAGAgaacuaccCGGAGACGUac-UUACCCg -3'
miRNA:   3'- aGGgCUCU--------GCCUUUGCGgcaAGUGGG- -5'
12643 3' -54.9 NC_003345.1 + 11978 0.66 0.866766
Target:  5'- gUCCgUGGGACGa----GCCGUUCgugGCCCg -3'
miRNA:   3'- -AGG-GCUCUGCcuuugCGGCAAG---UGGG- -5'
12643 3' -54.9 NC_003345.1 + 5584 0.66 0.866766
Target:  5'- gCCCGGaACGGucuacgAGACGCCGaacggUCACUa -3'
miRNA:   3'- aGGGCUcUGCC------UUUGCGGCa----AGUGGg -5'
12643 3' -54.9 NC_003345.1 + 74064 0.66 0.858912
Target:  5'- aCCaCGAG-CGGAGu--CCGggUCGCCCg -3'
miRNA:   3'- aGG-GCUCuGCCUUugcGGCa-AGUGGG- -5'
12643 3' -54.9 NC_003345.1 + 31405 0.66 0.850837
Target:  5'- -aCCGAGGuCGGGuuGCuaCGUUCcCCCg -3'
miRNA:   3'- agGGCUCU-GCCUu-UGcgGCAAGuGGG- -5'
12643 3' -54.9 NC_003345.1 + 64773 0.66 0.850837
Target:  5'- uUCCUGAuuGACGGAAcggauuACGUCaagcCGCCCg -3'
miRNA:   3'- -AGGGCU--CUGCCUU------UGCGGcaa-GUGGG- -5'
12643 3' -54.9 NC_003345.1 + 60170 0.66 0.84255
Target:  5'- -aCCGAGGCcGAugAACGCCGcaccagCACCg -3'
miRNA:   3'- agGGCUCUGcCU--UUGCGGCaa----GUGGg -5'
12643 3' -54.9 NC_003345.1 + 656 0.66 0.84255
Target:  5'- -aCCGGGGCGGGc-CGCU-UUCACCg -3'
miRNA:   3'- agGGCUCUGCCUuuGCGGcAAGUGGg -5'
12643 3' -54.9 NC_003345.1 + 38721 0.66 0.84255
Target:  5'- -aCCGAGuCGGcccGCGCCGUggggaGCCg -3'
miRNA:   3'- agGGCUCuGCCuu-UGCGGCAag---UGGg -5'
12643 3' -54.9 NC_003345.1 + 30953 0.66 0.834057
Target:  5'- aCCCGAG-CGGAAgGC-CCGUcCuCCCu -3'
miRNA:   3'- aGGGCUCuGCCUU-UGcGGCAaGuGGG- -5'
12643 3' -54.9 NC_003345.1 + 61905 0.66 0.834057
Target:  5'- cCCCGAGACGGAcucCGagaGUUCguaaACUCg -3'
miRNA:   3'- aGGGCUCUGCCUuu-GCgg-CAAG----UGGG- -5'
12643 3' -54.9 NC_003345.1 + 28924 0.67 0.825367
Target:  5'- aCCCG-GACGaAGAcCGCCGcacaUCAUCCg -3'
miRNA:   3'- aGGGCuCUGCcUUU-GCGGCa---AGUGGG- -5'
12643 3' -54.9 NC_003345.1 + 31438 0.67 0.825367
Target:  5'- gCCaCGGGAaaGGAGACGCCGaccagCACUa -3'
miRNA:   3'- aGG-GCUCUg-CCUUUGCGGCaa---GUGGg -5'
12643 3' -54.9 NC_003345.1 + 8344 0.67 0.825367
Target:  5'- -aCCGuggaGGAUGGAugGGCGUCGgaUACCCu -3'
miRNA:   3'- agGGC----UCUGCCU--UUGCGGCaaGUGGG- -5'
12643 3' -54.9 NC_003345.1 + 48579 0.67 0.824488
Target:  5'- aCCCGAuGAaccgcccCGGcca-GCCGUUCACuCCg -3'
miRNA:   3'- aGGGCU-CU-------GCCuuugCGGCAAGUG-GG- -5'
12643 3' -54.9 NC_003345.1 + 10829 0.67 0.807431
Target:  5'- cUCCCcgacGAGACGGAGGgcgaguccUGCCGaacaaUCGCCg -3'
miRNA:   3'- -AGGG----CUCUGCCUUU--------GCGGCa----AGUGGg -5'
12643 3' -54.9 NC_003345.1 + 10502 0.67 0.807431
Target:  5'- aUCCUGAagGGCGcucucGAAGCGuuGUUCAUCg -3'
miRNA:   3'- -AGGGCU--CUGC-----CUUUGCggCAAGUGGg -5'
12643 3' -54.9 NC_003345.1 + 14046 0.67 0.798202
Target:  5'- aCUCGGGAUGGAugaacAGCGCCucaggaUUCuCCCg -3'
miRNA:   3'- aGGGCUCUGCCU-----UUGCGGc-----AAGuGGG- -5'
12643 3' -54.9 NC_003345.1 + 34026 0.67 0.798202
Target:  5'- aUCCGAGAgGGAgccgaacgcaucGACGCCucuaACCCc -3'
miRNA:   3'- aGGGCUCUgCCU------------UUGCGGcaagUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.