miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12643 5' -54.3 NC_003345.1 + 26513 0.66 0.863689
Target:  5'- gAGGGcuacuacgaCGAGUUCAUUCCCgUCG-CUCa -3'
miRNA:   3'- -UCCCa--------GCUUAGGUAGGGGaAGCaGAG- -5'
12643 5' -54.3 NC_003345.1 + 11147 0.66 0.844728
Target:  5'- cAGGGaggcgacuuggcuuUCGAGUCCGUgUCCcUCGUC-Ca -3'
miRNA:   3'- -UCCC--------------AGCUUAGGUAgGGGaAGCAGaG- -5'
12643 5' -54.3 NC_003345.1 + 12211 0.66 0.829976
Target:  5'- cGGGUUGu-UCCAaugCUCCgggggUUCGUCUCg -3'
miRNA:   3'- uCCCAGCuuAGGUa--GGGG-----AAGCAGAG- -5'
12643 5' -54.3 NC_003345.1 + 74201 0.67 0.821024
Target:  5'- ----gCGAGUUCGacugCCCCUUCGUCUUa -3'
miRNA:   3'- ucccaGCUUAGGUa---GGGGAAGCAGAG- -5'
12643 5' -54.3 NC_003345.1 + 42500 0.67 0.798777
Target:  5'- cGGGUCGccggacuGAUuuuugugaccucgcCCGUCCCCUUCG-CUa -3'
miRNA:   3'- uCCCAGC-------UUA--------------GGUAGGGGAAGCaGAg -5'
12643 5' -54.3 NC_003345.1 + 20765 0.67 0.793059
Target:  5'- aAGGuUCGAGUCCuUCCCUcggCGUCg- -3'
miRNA:   3'- -UCCcAGCUUAGGuAGGGGaa-GCAGag -5'
12643 5' -54.3 NC_003345.1 + 3241 0.67 0.7834
Target:  5'- uGGGUCGGGauUCCAUCCCauauacUCGgccaaCUCc -3'
miRNA:   3'- uCCCAGCUU--AGGUAGGGga----AGCa----GAG- -5'
12643 5' -54.3 NC_003345.1 + 946 0.68 0.743354
Target:  5'- uGGGUC-AAUUCcgCCCCgguucCGUCUCc -3'
miRNA:   3'- uCCCAGcUUAGGuaGGGGaa---GCAGAG- -5'
12643 5' -54.3 NC_003345.1 + 49650 0.69 0.712142
Target:  5'- cAGGGUCGGcuuuagCCGUCUCCaaUUCGUacugCUCg -3'
miRNA:   3'- -UCCCAGCUua----GGUAGGGG--AAGCA----GAG- -5'
12643 5' -54.3 NC_003345.1 + 24388 0.69 0.680247
Target:  5'- uGGGUUGAcguugacucGUCCGaCCUCgcUCGUCUCg -3'
miRNA:   3'- uCCCAGCU---------UAGGUaGGGGa-AGCAGAG- -5'
12643 5' -54.3 NC_003345.1 + 33959 0.76 0.29669
Target:  5'- uGGcGUCGuAGUCCAUCCCCU-CGUCcCa -3'
miRNA:   3'- uCC-CAGC-UUAGGUAGGGGAaGCAGaG- -5'
12643 5' -54.3 NC_003345.1 + 53696 1.09 0.001995
Target:  5'- gAGGGUCGAAUCCAUCCCCUUCGUCUCc -3'
miRNA:   3'- -UCCCAGCUUAGGUAGGGGAAGCAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.