Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12643 | 5' | -54.3 | NC_003345.1 | + | 11147 | 0.66 | 0.844728 |
Target: 5'- cAGGGaggcgacuuggcuuUCGAGUCCGUgUCCcUCGUC-Ca -3' miRNA: 3'- -UCCC--------------AGCUUAGGUAgGGGaAGCAGaG- -5' |
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12643 | 5' | -54.3 | NC_003345.1 | + | 12211 | 0.66 | 0.829976 |
Target: 5'- cGGGUUGu-UCCAaugCUCCgggggUUCGUCUCg -3' miRNA: 3'- uCCCAGCuuAGGUa--GGGG-----AAGCAGAG- -5' |
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12643 | 5' | -54.3 | NC_003345.1 | + | 26513 | 0.66 | 0.863689 |
Target: 5'- gAGGGcuacuacgaCGAGUUCAUUCCCgUCG-CUCa -3' miRNA: 3'- -UCCCa--------GCUUAGGUAGGGGaAGCaGAG- -5' |
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12643 | 5' | -54.3 | NC_003345.1 | + | 20765 | 0.67 | 0.793059 |
Target: 5'- aAGGuUCGAGUCCuUCCCUcggCGUCg- -3' miRNA: 3'- -UCCcAGCUUAGGuAGGGGaa-GCAGag -5' |
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12643 | 5' | -54.3 | NC_003345.1 | + | 74201 | 0.67 | 0.821024 |
Target: 5'- ----gCGAGUUCGacugCCCCUUCGUCUUa -3' miRNA: 3'- ucccaGCUUAGGUa---GGGGAAGCAGAG- -5' |
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12643 | 5' | -54.3 | NC_003345.1 | + | 42500 | 0.67 | 0.798777 |
Target: 5'- cGGGUCGccggacuGAUuuuugugaccucgcCCGUCCCCUUCG-CUa -3' miRNA: 3'- uCCCAGC-------UUA--------------GGUAGGGGAAGCaGAg -5' |
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12643 | 5' | -54.3 | NC_003345.1 | + | 3241 | 0.67 | 0.7834 |
Target: 5'- uGGGUCGGGauUCCAUCCCauauacUCGgccaaCUCc -3' miRNA: 3'- uCCCAGCUU--AGGUAGGGga----AGCa----GAG- -5' |
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12643 | 5' | -54.3 | NC_003345.1 | + | 946 | 0.68 | 0.743354 |
Target: 5'- uGGGUC-AAUUCcgCCCCgguucCGUCUCc -3' miRNA: 3'- uCCCAGcUUAGGuaGGGGaa---GCAGAG- -5' |
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12643 | 5' | -54.3 | NC_003345.1 | + | 49650 | 0.69 | 0.712142 |
Target: 5'- cAGGGUCGGcuuuagCCGUCUCCaaUUCGUacugCUCg -3' miRNA: 3'- -UCCCAGCUua----GGUAGGGG--AAGCA----GAG- -5' |
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12643 | 5' | -54.3 | NC_003345.1 | + | 24388 | 0.69 | 0.680247 |
Target: 5'- uGGGUUGAcguugacucGUCCGaCCUCgcUCGUCUCg -3' miRNA: 3'- uCCCAGCU---------UAGGUaGGGGa-AGCAGAG- -5' |
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12643 | 5' | -54.3 | NC_003345.1 | + | 33959 | 0.76 | 0.29669 |
Target: 5'- uGGcGUCGuAGUCCAUCCCCU-CGUCcCa -3' miRNA: 3'- uCC-CAGC-UUAGGUAGGGGAaGCAGaG- -5' |
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12643 | 5' | -54.3 | NC_003345.1 | + | 53696 | 1.09 | 0.001995 |
Target: 5'- gAGGGUCGAAUCCAUCCCCUUCGUCUCc -3' miRNA: 3'- -UCCCAGCUUAGGUAGGGGAAGCAGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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