miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12644 5' -53.8 NC_003345.1 + 1303 0.66 0.885391
Target:  5'- -----cGCGAaAGCGGGGGCGGUUu- -3'
miRNA:   3'- cgugaaUGUUcUCGCCCUCGCCAGcg -5'
12644 5' -53.8 NC_003345.1 + 23233 0.66 0.885391
Target:  5'- cCGCUcggucgGgGAGAGCGGGcgucauGCGGUCu- -3'
miRNA:   3'- cGUGAa-----UgUUCUCGCCCu-----CGCCAGcg -5'
12644 5' -53.8 NC_003345.1 + 72429 0.66 0.877965
Target:  5'- aGUACgcGCuGGAGCcgccGGGcGGCGGUgGCc -3'
miRNA:   3'- -CGUGaaUGuUCUCG----CCC-UCGCCAgCG- -5'
12644 5' -53.8 NC_003345.1 + 14625 0.66 0.877965
Target:  5'- cGCACggccuccACucguGGucGUGGGAGCGGUCu- -3'
miRNA:   3'- -CGUGaa-----UGu---UCu-CGCCCUCGCCAGcg -5'
12644 5' -53.8 NC_003345.1 + 66437 0.66 0.854245
Target:  5'- cGUGCUUACGGcgcGAuGCGGGAcaggaGUGG-CGCg -3'
miRNA:   3'- -CGUGAAUGUU---CU-CGCCCU-----CGCCaGCG- -5'
12644 5' -53.8 NC_003345.1 + 29122 0.67 0.846726
Target:  5'- aGCACUUGCcgugaccguagugacAGAGCGGGccGGUGucuauGUCGUa -3'
miRNA:   3'- -CGUGAAUGu--------------UCUCGCCC--UCGC-----CAGCG- -5'
12644 5' -53.8 NC_003345.1 + 46808 0.67 0.845879
Target:  5'- aCGCUccGCGAGaAGUGGGAG-GGUCa- -3'
miRNA:   3'- cGUGAa-UGUUC-UCGCCCUCgCCAGcg -5'
12644 5' -53.8 NC_003345.1 + 59162 0.67 0.836427
Target:  5'- cGCugUUAagaGAGAGCGaccgaguGGAGuCGGUCu- -3'
miRNA:   3'- -CGugAAUg--UUCUCGC-------CCUC-GCCAGcg -5'
12644 5' -53.8 NC_003345.1 + 35312 0.67 0.819515
Target:  5'- cCACgaagguucUGgAGGAGUGuaaGGAGUGGUCGCc -3'
miRNA:   3'- cGUGa-------AUgUUCUCGC---CCUCGCCAGCG- -5'
12644 5' -53.8 NC_003345.1 + 46902 0.67 0.819515
Target:  5'- cGC-CUUugACGAcGGCGaGGGcGCGGUCGUg -3'
miRNA:   3'- -CGuGAA--UGUUcUCGC-CCU-CGCCAGCG- -5'
12644 5' -53.8 NC_003345.1 + 47317 0.68 0.781749
Target:  5'- cCGCUcuCAucuuccAGAGCGGGGGUGG-CGUc -3'
miRNA:   3'- cGUGAauGU------UCUCGCCCUCGCCaGCG- -5'
12644 5' -53.8 NC_003345.1 + 57450 0.69 0.710305
Target:  5'- aGCACaaucucacCGAGGaCGGuGAGUGGUCGCu -3'
miRNA:   3'- -CGUGaau-----GUUCUcGCC-CUCGCCAGCG- -5'
12644 5' -53.8 NC_003345.1 + 55887 0.69 0.710305
Target:  5'- -gGCUauCGGuGGUGGGGGCGGUgGCg -3'
miRNA:   3'- cgUGAauGUUcUCGCCCUCGCCAgCG- -5'
12644 5' -53.8 NC_003345.1 + 53870 1.05 0.004116
Target:  5'- gGCACUUACAAGAGCGGGAGCGG-CGCa -3'
miRNA:   3'- -CGUGAAUGUUCUCGCCCUCGCCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.