miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12646 5' -51.8 NC_003345.1 + 64234 0.66 0.959146
Target:  5'- uCUUCCccUCGAUGauucGCUUCGCGUUCa -3'
miRNA:   3'- -GGAGGcuGGUUAUga--CGAAGCGCAGG- -5'
12646 5' -51.8 NC_003345.1 + 38366 0.66 0.950928
Target:  5'- aUCUCCGAcCCGAUAC-GCUcgauuuccUCGCcUUCg -3'
miRNA:   3'- -GGAGGCU-GGUUAUGaCGA--------AGCGcAGG- -5'
12646 5' -51.8 NC_003345.1 + 72097 0.66 0.950928
Target:  5'- uCUUCCGACC-AUugUuCUUCGuCGguUCCg -3'
miRNA:   3'- -GGAGGCUGGuUAugAcGAAGC-GC--AGG- -5'
12646 5' -51.8 NC_003345.1 + 50985 0.66 0.950928
Target:  5'- cCCUUCGuGCCAaacuucGUGuccCUGCUUCGUGaacuUCCg -3'
miRNA:   3'- -GGAGGC-UGGU------UAU---GACGAAGCGC----AGG- -5'
12646 5' -51.8 NC_003345.1 + 75619 0.66 0.948262
Target:  5'- gCCUCCG-CCGcaACUGCggcgagcuguuccgUCGCGcUCg -3'
miRNA:   3'- -GGAGGCuGGUuaUGACGa-------------AGCGC-AGg -5'
12646 5' -51.8 NC_003345.1 + 60297 0.67 0.931355
Target:  5'- aCCUCgaugcucgcuaUGGCCGGUGCUGgUgcgGCGUUCa -3'
miRNA:   3'- -GGAG-----------GCUGGUUAUGACgAag-CGCAGG- -5'
12646 5' -51.8 NC_003345.1 + 47269 0.68 0.900189
Target:  5'- aCCUCCGACCGAagGgaGCcuucauuaaUUCgacugguggcgagGCGUCCg -3'
miRNA:   3'- -GGAGGCUGGUUa-UgaCG---------AAG-------------CGCAGG- -5'
12646 5' -51.8 NC_003345.1 + 51094 0.68 0.886824
Target:  5'- uUUCCGACCAcgAUaaACUGCUguccaucaUCGuCGUCa -3'
miRNA:   3'- gGAGGCUGGU--UA--UGACGA--------AGC-GCAGg -5'
12646 5' -51.8 NC_003345.1 + 11697 0.69 0.847393
Target:  5'- cCUUCCG-CCAGuUGCgGuCUUCGcCGUCCc -3'
miRNA:   3'- -GGAGGCuGGUU-AUGaC-GAAGC-GCAGG- -5'
12646 5' -51.8 NC_003345.1 + 62155 0.69 0.838817
Target:  5'- aCUCCGGCuCGAUGauguucaaggGCgagCGUGUCCa -3'
miRNA:   3'- gGAGGCUG-GUUAUga--------CGaa-GCGCAGG- -5'
12646 5' -51.8 NC_003345.1 + 22099 0.7 0.78715
Target:  5'- uCCgaaCCGACCuguaccucaguaacGUAUUGCUUgGCGUCUu -3'
miRNA:   3'- -GGa--GGCUGGu-------------UAUGACGAAgCGCAGG- -5'
12646 5' -51.8 NC_003345.1 + 69657 0.72 0.67962
Target:  5'- gCUUgCCGACCAGUACgaGCggUCGCGcacgUCCu -3'
miRNA:   3'- -GGA-GGCUGGUUAUGa-CGa-AGCGC----AGG- -5'
12646 5' -51.8 NC_003345.1 + 9586 0.72 0.668837
Target:  5'- cCCUUCGAUUA--GCUGUaUCGCGUCa -3'
miRNA:   3'- -GGAGGCUGGUuaUGACGaAGCGCAGg -5'
12646 5' -51.8 NC_003345.1 + 60369 0.75 0.536391
Target:  5'- cCCaUCCGACCAAgccggagACUGUcggguuugacacccUUCGCGUCa -3'
miRNA:   3'- -GG-AGGCUGGUUa------UGACG--------------AAGCGCAGg -5'
12646 5' -51.8 NC_003345.1 + 8362 0.75 0.51862
Target:  5'- cCCaCCGAcucCCAAUACUGCUcgaUGUGUCCg -3'
miRNA:   3'- -GGaGGCU---GGUUAUGACGAa--GCGCAGG- -5'
12646 5' -51.8 NC_003345.1 + 74746 0.76 0.457979
Target:  5'- aCUCCaGACCG--ACgGCUUCGCcGUCCa -3'
miRNA:   3'- gGAGG-CUGGUuaUGaCGAAGCG-CAGG- -5'
12646 5' -51.8 NC_003345.1 + 23603 0.84 0.180885
Target:  5'- gCCUgCCGAgCGGU-CUGCUUCGUGUCCu -3'
miRNA:   3'- -GGA-GGCUgGUUAuGACGAAGCGCAGG- -5'
12646 5' -51.8 NC_003345.1 + 54419 1.09 0.004294
Target:  5'- uCCUCCGACCAAUACUGCUUCGCGUCg -3'
miRNA:   3'- -GGAGGCUGGUUAUGACGAAGCGCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.