miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12648 5' -56.8 NC_003345.1 + 205 0.68 0.619103
Target:  5'- cCUGCCcCUGCC-CCGC--GCGGGCCg -3'
miRNA:   3'- uGAUGGuGGCGGuGGUGguCGCUUGG- -5'
12648 5' -56.8 NC_003345.1 + 33074 0.68 0.597892
Target:  5'- --gGCCgACCGCCAacCCGCCGGagGAAaCCg -3'
miRNA:   3'- ugaUGG-UGGCGGU--GGUGGUCg-CUU-GG- -5'
12648 5' -56.8 NC_003345.1 + 63080 0.68 0.597892
Target:  5'- ----aCugCGCCACCAgcacccUCAGCGAgaGCCg -3'
miRNA:   3'- ugaugGugGCGGUGGU------GGUCGCU--UGG- -5'
12648 5' -56.8 NC_003345.1 + 12946 0.68 0.597892
Target:  5'- cCUACCACCaccccucgaaGcCCAUCACUugacgGGCGAGCUg -3'
miRNA:   3'- uGAUGGUGG----------C-GGUGGUGG-----UCGCUUGG- -5'
12648 5' -56.8 NC_003345.1 + 19750 0.68 0.596834
Target:  5'- cGCUACCuugaGCCG-CGCCAgCGGCGGuuaucugcuggaaACCa -3'
miRNA:   3'- -UGAUGG----UGGCgGUGGUgGUCGCU-------------UGG- -5'
12648 5' -56.8 NC_003345.1 + 69476 0.68 0.587324
Target:  5'- uCUGCguCaCGCCGCCGCCcggAGCGAGa- -3'
miRNA:   3'- uGAUGguG-GCGGUGGUGG---UCGCUUgg -5'
12648 5' -56.8 NC_003345.1 + 5678 0.69 0.57679
Target:  5'- cGCUACgaaauCACCGUUACUGCCAGCu--CCg -3'
miRNA:   3'- -UGAUG-----GUGGCGGUGGUGGUCGcuuGG- -5'
12648 5' -56.8 NC_003345.1 + 2246 0.69 0.565253
Target:  5'- --cGCCACCGacuaCACCGCCAaCGAcuacaacGCCu -3'
miRNA:   3'- ugaUGGUGGCg---GUGGUGGUcGCU-------UGG- -5'
12648 5' -56.8 NC_003345.1 + 77132 0.69 0.555858
Target:  5'- cACaACgGCC-CCACaCACCAGaUGAACCa -3'
miRNA:   3'- -UGaUGgUGGcGGUG-GUGGUC-GCUUGG- -5'
12648 5' -56.8 NC_003345.1 + 62183 0.69 0.545474
Target:  5'- aGCgUACCAgCGUcaacagCACCACCAGCaucaucGAACCc -3'
miRNA:   3'- -UG-AUGGUgGCG------GUGGUGGUCG------CUUGG- -5'
12648 5' -56.8 NC_003345.1 + 7447 0.69 0.524901
Target:  5'- cACcGCCACUuugcuugguaGCCGCgACCGGCcAGCCa -3'
miRNA:   3'- -UGaUGGUGG----------CGGUGgUGGUCGcUUGG- -5'
12648 5' -56.8 NC_003345.1 + 59310 0.7 0.504629
Target:  5'- aGC-ACCGCCGUaauucgCACCGCUacccguggucGGCGGGCCu -3'
miRNA:   3'- -UGaUGGUGGCG------GUGGUGG----------UCGCUUGG- -5'
12648 5' -56.8 NC_003345.1 + 50638 0.7 0.504629
Target:  5'- --cACCAUCGCCACCugCguucuuGGCGAGa- -3'
miRNA:   3'- ugaUGGUGGCGGUGGugG------UCGCUUgg -5'
12648 5' -56.8 NC_003345.1 + 75286 0.7 0.484703
Target:  5'- ---uUCACCGCC-UCACCAGCagggcuGAACCg -3'
miRNA:   3'- ugauGGUGGCGGuGGUGGUCG------CUUGG- -5'
12648 5' -56.8 NC_003345.1 + 8025 0.7 0.474881
Target:  5'- --cGCCgcGCCGCCAucCCACCAaCGAACUu -3'
miRNA:   3'- ugaUGG--UGGCGGU--GGUGGUcGCUUGG- -5'
12648 5' -56.8 NC_003345.1 + 6206 0.71 0.418194
Target:  5'- --aACCACCGau-UCAuCCAGCGAGCCu -3'
miRNA:   3'- ugaUGGUGGCgguGGU-GGUCGCUUGG- -5'
12648 5' -56.8 NC_003345.1 + 73415 0.71 0.417284
Target:  5'- cGCUcaGCCACCGCCGCCggguucuGCCgacucgauggAGUGAuACCg -3'
miRNA:   3'- -UGA--UGGUGGCGGUGG-------UGG----------UCGCU-UGG- -5'
12648 5' -56.8 NC_003345.1 + 2711 0.72 0.409151
Target:  5'- cACUACCGCCGUCGCCGUC-GCu-ACCg -3'
miRNA:   3'- -UGAUGGUGGCGGUGGUGGuCGcuUGG- -5'
12648 5' -56.8 NC_003345.1 + 24726 0.72 0.400231
Target:  5'- cGCUAUgAuauUCGCCACCGCUGGCGuuCCg -3'
miRNA:   3'- -UGAUGgU---GGCGGUGGUGGUCGCuuGG- -5'
12648 5' -56.8 NC_003345.1 + 55341 0.72 0.400231
Target:  5'- cGCUcugaACCGCCGCCACCcccuCCGGUguuGGGCa -3'
miRNA:   3'- -UGA----UGGUGGCGGUGGu---GGUCG---CUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.