Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12649 | 3' | -60.9 | NC_003345.1 | + | 55591 | 1.08 | 0.000574 |
Target: 5'- cAUCGGCGUCACCGGGUUCACCCGCCCc -3' miRNA: 3'- -UAGCCGCAGUGGCCCAAGUGGGCGGG- -5' |
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12649 | 3' | -60.9 | NC_003345.1 | + | 38245 | 0.75 | 0.148138 |
Target: 5'- cGUCGGCGUCA-CGGuGUUCGgUCGCCUu -3' miRNA: 3'- -UAGCCGCAGUgGCC-CAAGUgGGCGGG- -5' |
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12649 | 3' | -60.9 | NC_003345.1 | + | 28873 | 0.75 | 0.152011 |
Target: 5'- -cCGGgGUCGCCGGGUacUACCCGCa- -3' miRNA: 3'- uaGCCgCAGUGGCCCAa-GUGGGCGgg -5' |
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12649 | 3' | -60.9 | NC_003345.1 | + | 11893 | 0.71 | 0.282675 |
Target: 5'- cUCGGUGacaACCGGGUguccUACCUGCUCg -3' miRNA: 3'- uAGCCGCag-UGGCCCAa---GUGGGCGGG- -5' |
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12649 | 3' | -60.9 | NC_003345.1 | + | 42103 | 0.71 | 0.289416 |
Target: 5'- aGUCgGGCGUUucgUCGGGUUCGCUCGCg- -3' miRNA: 3'- -UAG-CCGCAGu--GGCCCAAGUGGGCGgg -5' |
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12649 | 3' | -60.9 | NC_003345.1 | + | 32028 | 0.7 | 0.303274 |
Target: 5'- --aGGaaCGUgGCCGGGUUgACCCGUUCg -3' miRNA: 3'- uagCC--GCAgUGGCCCAAgUGGGCGGG- -5' |
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12649 | 3' | -60.9 | NC_003345.1 | + | 21951 | 0.7 | 0.310393 |
Target: 5'- cUCGGCGUCACCGacUUCACCaGCg- -3' miRNA: 3'- uAGCCGCAGUGGCccAAGUGGgCGgg -5' |
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12649 | 3' | -60.9 | NC_003345.1 | + | 42505 | 0.7 | 0.325009 |
Target: 5'- gGUCGcGgGUCGCCGGacugauuuuuGUgaccUCGCCCGUCCc -3' miRNA: 3'- -UAGC-CgCAGUGGCC----------CA----AGUGGGCGGG- -5' |
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12649 | 3' | -60.9 | NC_003345.1 | + | 61405 | 0.69 | 0.340131 |
Target: 5'- cUCGGCGUCACCcugcguGGUgUCAa-CGCCCu -3' miRNA: 3'- uAGCCGCAGUGGc-----CCA-AGUggGCGGG- -5' |
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12649 | 3' | -60.9 | NC_003345.1 | + | 72305 | 0.69 | 0.355756 |
Target: 5'- cGUCGuCGUCGUCGGGgcCACcgCCGCCCg -3' miRNA: 3'- -UAGCcGCAGUGGCCCaaGUG--GGCGGG- -5' |
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12649 | 3' | -60.9 | NC_003345.1 | + | 24582 | 0.69 | 0.361342 |
Target: 5'- cUCGGCGgcaggaCGCCGGGaggUCGCCCucgaaguacggaacGCCa -3' miRNA: 3'- uAGCCGCa-----GUGGCCCa--AGUGGG--------------CGGg -5' |
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12649 | 3' | -60.9 | NC_003345.1 | + | 21450 | 0.69 | 0.363755 |
Target: 5'- --aGGC-UCACCGGGUcgUCGCCCucacggacaGCCUc -3' miRNA: 3'- uagCCGcAGUGGCCCA--AGUGGG---------CGGG- -5' |
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12649 | 3' | -60.9 | NC_003345.1 | + | 42613 | 0.69 | 0.363755 |
Target: 5'- cGUCGGCGUCuCUGGuGagcggcuaaUUgACCCGUCCu -3' miRNA: 3'- -UAGCCGCAGuGGCC-C---------AAgUGGGCGGG- -5' |
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12649 | 3' | -60.9 | NC_003345.1 | + | 9719 | 0.69 | 0.371879 |
Target: 5'- -aCGGUGUUccguCCGGGUcguaCAUCCGCCa -3' miRNA: 3'- uaGCCGCAGu---GGCCCAa---GUGGGCGGg -5' |
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12649 | 3' | -60.9 | NC_003345.1 | + | 21865 | 0.68 | 0.396126 |
Target: 5'- gGUCGGCGgcCugCGGGa-CACCCucgggaaGCCCc -3' miRNA: 3'- -UAGCCGCa-GugGCCCaaGUGGG-------CGGG- -5' |
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12649 | 3' | -60.9 | NC_003345.1 | + | 46822 | 0.68 | 0.39698 |
Target: 5'- --aGGCGUCACgCGGGUUguCCUGauacuCCg -3' miRNA: 3'- uagCCGCAGUG-GCCCAAguGGGCg----GG- -5' |
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12649 | 3' | -60.9 | NC_003345.1 | + | 29820 | 0.68 | 0.39698 |
Target: 5'- cUCGGuCGUCuacuguACCGGGUgCGcCCCGUUCg -3' miRNA: 3'- uAGCC-GCAG------UGGCCCAaGU-GGGCGGG- -5' |
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12649 | 3' | -60.9 | NC_003345.1 | + | 21767 | 0.68 | 0.405586 |
Target: 5'- cGUCGGaGUCACCGucgUCGuCgCCGCCCg -3' miRNA: 3'- -UAGCCgCAGUGGCccaAGU-G-GGCGGG- -5' |
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12649 | 3' | -60.9 | NC_003345.1 | + | 64424 | 0.68 | 0.414309 |
Target: 5'- -aCGGCGUCAagGGGaUUCAcuucaugcacCCCgGCCCg -3' miRNA: 3'- uaGCCGCAGUggCCC-AAGU----------GGG-CGGG- -5' |
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12649 | 3' | -60.9 | NC_003345.1 | + | 46765 | 0.67 | 0.450318 |
Target: 5'- cGUCGGCGUaguccCGCCacaGGUUCuccuccacgACCgCGCCCu -3' miRNA: 3'- -UAGCCGCA-----GUGGc--CCAAG---------UGG-GCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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