Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12649 | 3' | -60.9 | NC_003345.1 | + | 21951 | 0.7 | 0.310393 |
Target: 5'- cUCGGCGUCACCGacUUCACCaGCg- -3' miRNA: 3'- uAGCCGCAGUGGCccAAGUGGgCGgg -5' |
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12649 | 3' | -60.9 | NC_003345.1 | + | 32028 | 0.7 | 0.303274 |
Target: 5'- --aGGaaCGUgGCCGGGUUgACCCGUUCg -3' miRNA: 3'- uagCC--GCAgUGGCCCAAgUGGGCGGG- -5' |
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12649 | 3' | -60.9 | NC_003345.1 | + | 42103 | 0.71 | 0.289416 |
Target: 5'- aGUCgGGCGUUucgUCGGGUUCGCUCGCg- -3' miRNA: 3'- -UAG-CCGCAGu--GGCCCAAGUGGGCGgg -5' |
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12649 | 3' | -60.9 | NC_003345.1 | + | 11893 | 0.71 | 0.282675 |
Target: 5'- cUCGGUGacaACCGGGUguccUACCUGCUCg -3' miRNA: 3'- uAGCCGCag-UGGCCCAa---GUGGGCGGG- -5' |
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12649 | 3' | -60.9 | NC_003345.1 | + | 28873 | 0.75 | 0.152011 |
Target: 5'- -cCGGgGUCGCCGGGUacUACCCGCa- -3' miRNA: 3'- uaGCCgCAGUGGCCCAa-GUGGGCGgg -5' |
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12649 | 3' | -60.9 | NC_003345.1 | + | 38245 | 0.75 | 0.148138 |
Target: 5'- cGUCGGCGUCA-CGGuGUUCGgUCGCCUu -3' miRNA: 3'- -UAGCCGCAGUgGCC-CAAGUgGGCGGG- -5' |
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12649 | 3' | -60.9 | NC_003345.1 | + | 55591 | 1.08 | 0.000574 |
Target: 5'- cAUCGGCGUCACCGGGUUCACCCGCCCc -3' miRNA: 3'- -UAGCCGCAGUGGCCCAAGUGGGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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