miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12649 5' -48.9 NC_003345.1 + 11657 0.66 0.994615
Target:  5'- gCC-GACGAugGUGUUCGUgUGAaUCaGCCg -3'
miRNA:   3'- -GGcCUGCU--CAUAAGCA-ACUaAGcCGG- -5'
12649 5' -48.9 NC_003345.1 + 33172 0.66 0.994615
Target:  5'- uCCGG-CGGGUuggCGg----UCGGCCc -3'
miRNA:   3'- -GGCCuGCUCAuaaGCaacuaAGCCGG- -5'
12649 5' -48.9 NC_003345.1 + 44027 0.66 0.994615
Target:  5'- aCaGACGAGUGcgaacaaggucUUCGUUGuuGUUcCGGUCa -3'
miRNA:   3'- gGcCUGCUCAU-----------AAGCAAC--UAA-GCCGG- -5'
12649 5' -48.9 NC_003345.1 + 35689 0.66 0.994615
Target:  5'- aCGGACGuAGcucggUCGggcGGcUCGGCCu -3'
miRNA:   3'- gGCCUGC-UCaua--AGCaa-CUaAGCCGG- -5'
12649 5' -48.9 NC_003345.1 + 38212 0.66 0.994615
Target:  5'- cCCGGACGGcuccccggAUUgGgagaaGAUUCGGCUc -3'
miRNA:   3'- -GGCCUGCUca------UAAgCaa---CUAAGCCGG- -5'
12649 5' -48.9 NC_003345.1 + 70484 0.66 0.990301
Target:  5'- gUGGGgGAGUccUCGgaGAacUCGGCCu -3'
miRNA:   3'- gGCCUgCUCAuaAGCaaCUa-AGCCGG- -5'
12649 5' -48.9 NC_003345.1 + 12534 0.67 0.988883
Target:  5'- gCUGGA--AGUGUUCGgc-GUUCGGCg -3'
miRNA:   3'- -GGCCUgcUCAUAAGCaacUAAGCCGg -5'
12649 5' -48.9 NC_003345.1 + 51916 0.67 0.988883
Target:  5'- gCCGGAUGAuagacUcgUCGUUGAUguUC-GCCg -3'
miRNA:   3'- -GGCCUGCUc----AuaAGCAACUA--AGcCGG- -5'
12649 5' -48.9 NC_003345.1 + 2160 0.67 0.988883
Target:  5'- aCGGugGAGUggUCGUccuucUGAagaaGGUCg -3'
miRNA:   3'- gGCCugCUCAuaAGCA-----ACUaag-CCGG- -5'
12649 5' -48.9 NC_003345.1 + 57970 0.67 0.985568
Target:  5'- cCCGGACGGGaaguUAUggGUcGGUagUCGGCa -3'
miRNA:   3'- -GGCCUGCUC----AUAagCAaCUA--AGCCGg -5'
12649 5' -48.9 NC_003345.1 + 76798 0.67 0.985568
Target:  5'- -gGaGACGAGUAaUUGggGGUauuaagacuuaUCGGCCu -3'
miRNA:   3'- ggC-CUGCUCAUaAGCaaCUA-----------AGCCGG- -5'
12649 5' -48.9 NC_003345.1 + 44987 0.67 0.981764
Target:  5'- aCCGGAUGAGUGauUUCGUcUGAacgaccagcaguaaCGGCg -3'
miRNA:   3'- -GGCCUGCUCAU--AAGCA-ACUaa------------GCCGg -5'
12649 5' -48.9 NC_003345.1 + 60728 0.67 0.981545
Target:  5'- -gGGAUGAGUAUgCGggaaAUUCuGGCCg -3'
miRNA:   3'- ggCCUGCUCAUAaGCaac-UAAG-CCGG- -5'
12649 5' -48.9 NC_003345.1 + 56220 0.69 0.956873
Target:  5'- cUCGGACGGGUua--GUUGGUUCaGUa -3'
miRNA:   3'- -GGCCUGCUCAuaagCAACUAAGcCGg -5'
12649 5' -48.9 NC_003345.1 + 62802 0.69 0.952692
Target:  5'- aCGGACGAGaggcgcUUGUUGAUUggcgUGGUCg -3'
miRNA:   3'- gGCCUGCUCaua---AGCAACUAA----GCCGG- -5'
12649 5' -48.9 NC_003345.1 + 24488 0.69 0.950057
Target:  5'- gUCGGACGAGUcaacgUCaacccacgggucgauGUUGAUUCcGCCu -3'
miRNA:   3'- -GGCCUGCUCAua---AG---------------CAACUAAGcCGG- -5'
12649 5' -48.9 NC_003345.1 + 75410 0.69 0.948247
Target:  5'- aCCGGggccGCGAGg--UCGgcGGUUCaGCCc -3'
miRNA:   3'- -GGCC----UGCUCauaAGCaaCUAAGcCGG- -5'
12649 5' -48.9 NC_003345.1 + 43734 0.7 0.941572
Target:  5'- gCCGGAUGAGgacGUUCGagagaacaacgaGAUUCGGUg -3'
miRNA:   3'- -GGCCUGCUCa--UAAGCaa----------CUAAGCCGg -5'
12649 5' -48.9 NC_003345.1 + 30363 0.86 0.231476
Target:  5'- uCCGGugGAGU--UCGUUGAUU-GGCCg -3'
miRNA:   3'- -GGCCugCUCAuaAGCAACUAAgCCGG- -5'
12649 5' -48.9 NC_003345.1 + 55625 1.16 0.003157
Target:  5'- gCCGGACGAGUAUUCGUUGAUUCGGCCg -3'
miRNA:   3'- -GGCCUGCUCAUAAGCAACUAAGCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.