miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12650 3' -57.6 NC_003345.1 + 35762 0.65 0.739534
Target:  5'- aGGAcGCcACCAUauccggugggauugUCACCaucUCCUCGGUGu -3'
miRNA:   3'- -CCU-CGcUGGUG--------------AGUGGc--AGGAGCCAC- -5'
12650 3' -57.6 NC_003345.1 + 72773 0.66 0.731529
Target:  5'- cGGcGGCGAaguccauCCGCUCGCCcUCgUCGGg- -3'
miRNA:   3'- -CC-UCGCU-------GGUGAGUGGcAGgAGCCac -5'
12650 3' -57.6 NC_003345.1 + 23259 0.66 0.722454
Target:  5'- gGGAGUGAUUaggagAgUCGCCGUCuccgCUCGGUc -3'
miRNA:   3'- -CCUCGCUGG-----UgAGUGGCAG----GAGCCAc -5'
12650 3' -57.6 NC_003345.1 + 19852 0.66 0.712294
Target:  5'- --cGCGACUAC-CA-CGaCCUCGGUGg -3'
miRNA:   3'- ccuCGCUGGUGaGUgGCaGGAGCCAC- -5'
12650 3' -57.6 NC_003345.1 + 3630 0.66 0.69177
Target:  5'- cGGAGCGGCCua-CACCGgagCUUGGa- -3'
miRNA:   3'- -CCUCGCUGGugaGUGGCag-GAGCCac -5'
12650 3' -57.6 NC_003345.1 + 2736 0.67 0.671038
Target:  5'- gGGAGU--CCAag-ACCGUCUUCGGUGu -3'
miRNA:   3'- -CCUCGcuGGUgagUGGCAGGAGCCAC- -5'
12650 3' -57.6 NC_003345.1 + 34846 0.67 0.671038
Target:  5'- cGAGCGGCCA-UCACgggaaCGUCgUCGGg- -3'
miRNA:   3'- cCUCGCUGGUgAGUG-----GCAGgAGCCac -5'
12650 3' -57.6 NC_003345.1 + 75121 0.67 0.639715
Target:  5'- cGGA-CGA--GCUgACCGUCCUCGGa- -3'
miRNA:   3'- -CCUcGCUggUGAgUGGCAGGAGCCac -5'
12650 3' -57.6 NC_003345.1 + 3484 0.67 0.639715
Target:  5'- uGGAGCGGCCAgCUCAUCa----CGGUGg -3'
miRNA:   3'- -CCUCGCUGGU-GAGUGGcaggaGCCAC- -5'
12650 3' -57.6 NC_003345.1 + 3534 0.68 0.597899
Target:  5'- --uGCGACCGaggugugcCUCACCGUUCUCGa-- -3'
miRNA:   3'- ccuCGCUGGU--------GAGUGGCAGGAGCcac -5'
12650 3' -57.6 NC_003345.1 + 46005 0.69 0.536101
Target:  5'- cGAGCGgcgaACCACUCGUCGUaCUCGGUc -3'
miRNA:   3'- cCUCGC----UGGUGAGUGGCAgGAGCCAc -5'
12650 3' -57.6 NC_003345.1 + 14105 0.69 0.515968
Target:  5'- gGGAGCGAUUGCgagguacuucUCAgaGUCCUCGGg- -3'
miRNA:   3'- -CCUCGCUGGUG----------AGUggCAGGAGCCac -5'
12650 3' -57.6 NC_003345.1 + 36436 0.7 0.457594
Target:  5'- cGAGCGAgCCAUuccuUCGCCGUCUcuaUCGGg- -3'
miRNA:   3'- cCUCGCU-GGUG----AGUGGCAGG---AGCCac -5'
12650 3' -57.6 NC_003345.1 + 63306 0.71 0.429758
Target:  5'- cGGAuGCGuCCucGCUCACCGgccCCUCGGc- -3'
miRNA:   3'- -CCU-CGCuGG--UGAGUGGCa--GGAGCCac -5'
12650 3' -57.6 NC_003345.1 + 57337 1.11 0.000808
Target:  5'- cGGAGCGACCACUCACCGUCCUCGGUGa -3'
miRNA:   3'- -CCUCGCUGGUGAGUGGCAGGAGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.