miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12650 5' -49.9 NC_003345.1 + 51927 0.66 0.964261
Target:  5'- ---cUUAGUGACGGcacGGAACUUCUCUc -3'
miRNA:   3'- cuguGGUCAUUGCC---UCUUGAAGAGGu -5'
12650 5' -49.9 NC_003345.1 + 11562 0.67 0.956478
Target:  5'- cGGC-CCAcu--CGGAGAugUUCUCCc -3'
miRNA:   3'- -CUGuGGUcauuGCCUCUugAAGAGGu -5'
12650 5' -49.9 NC_003345.1 + 8605 0.67 0.952185
Target:  5'- aGGCuCCGGUAGCguucguggguguGGAGAGCUUCgagauUCCu -3'
miRNA:   3'- -CUGuGGUCAUUG------------CCUCUUGAAG-----AGGu -5'
12650 5' -49.9 NC_003345.1 + 44963 0.68 0.924153
Target:  5'- cGAcCAgCAGUAACGGcgaaccggccaucGGACUUCUCCu -3'
miRNA:   3'- -CU-GUgGUCAUUGCCu------------CUUGAAGAGGu -5'
12650 5' -49.9 NC_003345.1 + 63580 0.69 0.886321
Target:  5'- aGCGCCcccacucgaAGUGACGGAGAGCg---CCGa -3'
miRNA:   3'- cUGUGG---------UCAUUGCCUCUUGaagaGGU- -5'
12650 5' -49.9 NC_003345.1 + 32098 0.69 0.886321
Target:  5'- gGACGUagaAGUAgGCGGGGAAgUUCUCCAc -3'
miRNA:   3'- -CUGUGg--UCAU-UGCCUCUUgAAGAGGU- -5'
12650 5' -49.9 NC_003345.1 + 67977 0.69 0.877089
Target:  5'- aGCGCCGGgcuucuuaauccGGCGGAGuGCgUUCUCCAu -3'
miRNA:   3'- cUGUGGUCa-----------UUGCCUCuUG-AAGAGGU- -5'
12650 5' -49.9 NC_003345.1 + 48266 0.71 0.827376
Target:  5'- uACACCgaaGGaAAUGGAGAGCUuggCUCCAc -3'
miRNA:   3'- cUGUGG---UCaUUGCCUCUUGAa--GAGGU- -5'
12650 5' -49.9 NC_003345.1 + 57487 0.71 0.818029
Target:  5'- aACGuCCAGU--UGGAGAAgUUCUCCGu -3'
miRNA:   3'- cUGU-GGUCAuuGCCUCUUgAAGAGGU- -5'
12650 5' -49.9 NC_003345.1 + 66388 0.72 0.733687
Target:  5'- uGCACCAGU-ACGGGGAguaccuguucgauaACcUCUCCGa -3'
miRNA:   3'- cUGUGGUCAuUGCCUCU--------------UGaAGAGGU- -5'
12650 5' -49.9 NC_003345.1 + 57374 1.09 0.004887
Target:  5'- gGACACCAGUAACGGAGAACUUCUCCAa -3'
miRNA:   3'- -CUGUGGUCAUUGCCUCUUGAAGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.